Detail information of GWHGAAZE015334


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006450098.16.0253E-156hypothetical protein CICLE_v10009349mg [Citrus clementina]
Swissprottr|Q8LD27|PSB6_ARATH3E-149Proteasome subunit beta type-6 (Precursor)
trEMBLtr|A0A067FIM2|A0A067FIM2_CITSI2E-156Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIR10AT4G31300.31E-107N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3188001931889752-
GWHAAZE00000004mRNA3188001931889752-
GWHAAZE00000004exon3188001931880542-
GWHAAZE00000004exon3188216131882235-
GWHAAZE00000004exon3188338031883453-
GWHAAZE00000004exon3188385131883962-
GWHAAZE00000004exon3188556631885638-
GWHAAZE00000004exon3188716431887219-
GWHAAZE00000004exon3188946231889538-
GWHAAZE00000004exon3188964131889752-
GWHAAZE00000004CDS3188964131889752-
GWHAAZE00000004CDS3188946231889538-
GWHAAZE00000004CDS3188716431887219-
GWHAAZE00000004CDS3188556631885638-
GWHAAZE00000004CDS3188385131883962-
GWHAAZE00000004CDS3188338031883453-
GWHAAZE00000004CDS3188216131882235-
GWHAAZE00000004CDS3188041131880542-
GWHAAZE00000004three_prime_UTR3188001931880410-
Transcript Sequence

Network for GWHGAAZE015334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0088


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.27Proteasome141942.50E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02738PSMB6 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603biological_processproteolysis involved in cellular protein catabolic process
GO:0005839cellular_componentproteasome core complex
GO:0004298molecular_functionthreonine-type endopeptidase activity
GO:0004175molecular_functionendopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf144.372
SRR3591706second leaf70.866
SRR3591707mature leaf48.311
SRR3591708Shoot apex127.262
SRR3591709Stem118.123
SRR3591710White floral bud126.442
SRR3591711White flower212.143
SRR3591712Green floral bud133.569
SRR3591713Yellow flower229.737
SRP173429 SRR8316895Juvenile bud stage 89.516
SRR8316896Juvenile bud stage 133.822
SRR8316897Juvenile bud stage 75.364
SRR8316894Third green stage 54.103
SRR8316900Third green stage 161.031
SRR8316901Third green stage 150.575
SRR8316898Complete white stage 71.137
SRR8316899Complete white stage 197.076
SRR8316903Complete white stage 92.576
SRR8316902Silver flowering stage89.978
SRR8316904Silver flowering stage94.607
SRR8316905Silver flowering stage47.279
SRR8316906Gold flowering stage 215.356
SRR8316907Gold flowering stage 211.209
SRR8316908Gold flowering stage 219.540
SRP132670SRR6706286Control160.462
SRR6706287Light intensity 50%156.102
SRR6706288Light intensity 20%174.360
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1139.385
CNS0095593Slightly white alabastrum(diploid) 2150.053
CNS0095594Slightly white alabastrum(diploid) 3144.000
CNS0095595Whole white alabastrum(diploid) 2117.659
CNS0095596Whole white alabastrum(diploid) 3112.529
CNS0095597Whole white alabastrum(diploid) 4106.126
CNS0095598Silvery flower (diploied) 194.905
CNS0095599Silvery flower (diploied) 2103.653
CNS0095600Silvery flower (diploied) 3159.242
CNS0095601Golden flower (diploid) 196.247
CNS0095602Golden flower (diploid) 2134.385
CNS0095603Golden flower (diploid) 3129.919
CNS0095604Slightly white alabastrum(tetraploid) 1115.685
CNS0095605Slightly white alabastrum(tetraploid) 2107.802
CNS0095606Slightly white alabastrum(tetraploid) 3139.713
CNS0095607Whole white alabastrum(tetraploid) 183.123
CNS0095608Whole white alabastrum(tetraploid) 275.791
CNS0095609Whole white alabastrum(tetraploid) 3122.504
CNS0095610Silvery flower (tetraploid) 1189.415
CNS0095611Silvery flower (tetraploid) 2158.903
CNS0095612Silvery flower (tetraploid) 3144.312
CNS0095613Golden flower (tetraploid) 1178.038
CNS0095614Golden flower (tetraploid) 2158.776
CNS0095615Golden flower (tetraploid) 3177.242
CRA001975CRR073297Stem 1135.630
CRR073298Stem 2132.810
CRR073299Stem 3176.001
CRR073300Leaf 1155.048
CRR073301Leaf 2162.796
CRR073302Leaf 3198.420
CRR073303Juvenile bud 1190.541
CRR073304Juvenile bud 2180.504
CRR073305Juvenile bud 3149.803
CRR073306Third green 1141.124
CRR073307Third green 2138.823
CRR073308Third green 3130.309
CRR073309Second white 1257.410
CRR073310Second white 2168.049
CRR073311Second white 3140.761
CRR073312Silver flowering 1158.287
CRR073313Silver flowering 2217.140
CRR073314Silver flowering 3130.354
CRR073315Gold flowering 1143.642
CRR073316Gold flowering 2132.181
CRR073317Gold flowering 3135.018
CRR073318Tawny withering 1147.052
CRR073319Tawny withering 2148.333
CRR073320Tawny withering 3143.331