Gene detail

Detail information of GWHGAAZE015339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008459153.1	1.6677E-112	PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Cucumis melo]
Swissprot	tr\|Q9SZE4\|VP322_ARATH	2E-101	Vacuolar protein sorting-associated protein 32 homolog 2
trEMBL	tr\|A0A0A0LHT5\|A0A0A0LHT5_CUCSA	2E-112	Uncharacterized protein {ECO:0000313\|EMBL:KGN60554.1}
TAIR10	AT2G19830.1	2E-55	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	32118608	32121654	+
GWHAAZE00000004	mRNA	32118608	32121654	+
GWHAAZE00000004	exon	32118608	32118707	+
GWHAAZE00000004	exon	32119810	32119895	+
GWHAAZE00000004	exon	32120023	32120114	+
GWHAAZE00000004	exon	32121188	32121302	+
GWHAAZE00000004	exon	32121463	32121654	+
GWHAAZE00000004	CDS	32118608	32118707	+
GWHAAZE00000004	CDS	32119810	32119895	+
GWHAAZE00000004	CDS	32120023	32120114	+
GWHAAZE00000004	CDS	32121188	32121302	+
GWHAAZE00000004	CDS	32121463	32121654	+

Transcript Sequence
>GWHTAAZE015355 ACACTTGAAATGCTAGAGAAGAAGGAGAATGTACTTTCAAGAAAGGCTGCTGCAGAGGTCGAAAAGGCCAAGGAATTTACCCGAGCAAAGAATAAGAGGGCTGCTATACAATGTTTGAAAAGAAAGAGGCTCTATGAAGGGCAAATTGAACAACTCGGTAATTTCCAATTGCGCATCCATGATCAGATGATACTGTTAGAAGGAGCAAAAGCAACAACAGAAACTGTTGATGCTTTGAGAACTGGAGCTGCTGCAATGAAGGCAATGCAGAAAGCAACGAACATTGATGACGTGGACAAGACAATGGATGAAATAAACGAGCAAACGGAAAACATGAAACAAATACAGGAGGCATTATCTACACCCATCGGTGCAGCAGCCGATTTTGATGAGGATGAATTGGAGGCGGAGCTTGAGGAATTAGAAGGCGCTGAGTTGGAGGAACAGCTTCTTCAACCTGCAACAACGGCACCAGCAGCTCCGGTGCCCATTCCGGCAGGCCGGCAACCAGCTCGGCCCGCTCCTCAGAGGCGTACGGCTGAGGAAGATGAACTTGCTGCATTACAGGCAGAAATGGCGCTTTGA

Network for GWHGAAZE015339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	3	161	9.10E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12194	CHMP4, SNF7, VPS32	Endocytosis	map04144
K12194	CHMP4, SNF7, VPS32	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.128
	SRR3591706	second leaf	48.608
	SRR3591707	mature leaf	58.578
	SRR3591708	Shoot apex	57.692
	SRR3591709	Stem	109.338
	SRR3591710	White floral bud	88.875
	SRR3591711	White flower	113.311
	SRR3591712	Green floral bud	85.277
	SRR3591713	Yellow flower	104.509
SRP173429	SRR8316895	Juvenile bud stage	45.316
	SRR8316896	Juvenile bud stage	63.021
	SRR8316897	Juvenile bud stage	34.148
	SRR8316894	Third green stage	26.074
	SRR8316900	Third green stage	73.838
	SRR8316901	Third green stage	71.220
	SRR8316898	Complete white stage	39.508
	SRR8316899	Complete white stage	102.968
	SRR8316903	Complete white stage	60.586
	SRR8316902	Silver flowering stage	52.593
	SRR8316904	Silver flowering stage	58.489
	SRR8316905	Silver flowering stage	26.583
	SRR8316906	Gold flowering stage	120.849
	SRR8316907	Gold flowering stage	130.181
	SRR8316908	Gold flowering stage	139.554
SRP132670	SRR6706286	Control	71.757
	SRR6706287	Light intensity 50%	77.143
	SRR6706288	Light intensity 20%	79.654
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	81.662
	CNS0095593	Slightly white alabastrum(diploid) 2	86.510
	CNS0095594	Slightly white alabastrum(diploid) 3	69.404
	CNS0095595	Whole white alabastrum(diploid) 2	66.408
	CNS0095596	Whole white alabastrum(diploid) 3	74.875
	CNS0095597	Whole white alabastrum(diploid) 4	63.525
	CNS0095598	Silvery flower (diploied) 1	76.582
	CNS0095599	Silvery flower (diploied) 2	71.869
	CNS0095600	Silvery flower (diploied) 3	96.110
	CNS0095601	Golden flower (diploid) 1	78.203
	CNS0095602	Golden flower (diploid) 2	79.545
	CNS0095603	Golden flower (diploid) 3	74.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.929
	CNS0095605	Slightly white alabastrum(tetraploid) 2	64.863
	CNS0095606	Slightly white alabastrum(tetraploid) 3	77.650
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.363
	CNS0095609	Whole white alabastrum(tetraploid) 3	63.922
	CNS0095610	Silvery flower (tetraploid) 1	83.612
	CNS0095611	Silvery flower (tetraploid) 2	90.485
	CNS0095612	Silvery flower (tetraploid) 3	89.906
	CNS0095613	Golden flower (tetraploid) 1	83.419
	CNS0095614	Golden flower (tetraploid) 2	78.284
	CNS0095615	Golden flower (tetraploid) 3	91.750
CRA001975	CRR073297	Stem 1	103.338
	CRR073298	Stem 2	90.589
	CRR073299	Stem 3	82.215
	CRR073300	Leaf 1	90.280
	CRR073301	Leaf 2	87.271
	CRR073302	Leaf 3	76.443
	CRR073303	Juvenile bud 1	103.406
	CRR073304	Juvenile bud 2	76.543
	CRR073305	Juvenile bud 3	99.165
	CRR073306	Third green 1	48.445
	CRR073307	Third green 2	55.422
	CRR073308	Third green 3	51.117
	CRR073309	Second white 1	60.131
	CRR073310	Second white 2	78.839
	CRR073311	Second white 3	56.775
	CRR073312	Silver flowering 1	45.885
	CRR073313	Silver flowering 2	35.391
	CRR073314	Silver flowering 3	36.272
	CRR073315	Gold flowering 1	60.710
	CRR073316	Gold flowering 2	71.597
	CRR073317	Gold flowering 3	38.228
	CRR073318	Tawny withering 1	73.549
	CRR073319	Tawny withering 2	95.566
	CRR073320	Tawny withering 3	80.690