Detail information of GWHGAAZE015347


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010530306.11.01591E-28PREDICTED: polygalacturonase-like [Tarenaya hassleriana]
Swissprottr|O22818|PGLR6_ARATH3E-25Probable polygalacturonase At2g43860 (Precursor)
trEMBLtr|V7B7G6|V7B7G6_PHAVU4E-29Uncharacterized protein {ECO:0000313|EMBL:ESW12798.1}
TAIR10AT2G43870.18E-26Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3254839032548848+
GWHAAZE00000004mRNA3254839032548848+
GWHAAZE00000004exon3254839032548743+
GWHAAZE00000004exon3254882832548848+
GWHAAZE00000004CDS3254839032548743+
GWHAAZE00000004CDS3254882832548848+
Transcript Sequence

Network for GWHGAAZE015347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12708.8Pectate_lyase_320705.10E-11
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01184E3.2.1.15 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.681
SRR8316896Juvenile bud stage 2.314
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.752
SRR8316900Third green stage 4.183
SRR8316901Third green stage 1.453
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.928
SRR8316903Complete white stage 0.571
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control3.857
SRR6706287Light intensity 50%3.045
SRR6706288Light intensity 20%3.430
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.930
CNS0095593Slightly white alabastrum(diploid) 21.070
CNS0095594Slightly white alabastrum(diploid) 31.045
CNS0095595Whole white alabastrum(diploid) 20.613
CNS0095596Whole white alabastrum(diploid) 30.557
CNS0095597Whole white alabastrum(diploid) 41.626
CNS0095598Silvery flower (diploied) 10.132
CNS0095599Silvery flower (diploied) 20.041
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.732
CNS0095602Golden flower (diploid) 20.376
CNS0095603Golden flower (diploid) 30.198
CNS0095604Slightly white alabastrum(tetraploid) 10.064
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.018
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.264
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.391
CRR073298Stem 23.634
CRR073299Stem 36.722
CRR073300Leaf 14.856
CRR073301Leaf 26.726
CRR073302Leaf 310.230
CRR073303Juvenile bud 13.695
CRR073304Juvenile bud 26.886
CRR073305Juvenile bud 33.271
CRR073306Third green 10.188
CRR073307Third green 20.106
CRR073308Third green 30.309
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000