Gene detail

Detail information of GWHGAAZE015353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009790312.1	0	PREDICTED: ribosome biogenesis protein WDR12 homolog [Nicotiana sylvestris]
Swissprot	tr\|A8IR43\|WDR12_CHLRE	6E-73	Ribosome biogenesis protein WDR12 homolog {ECO:0000255\|HAMAP-Rule:MF_03029}
trEMBL	tr\|M0ZM54\|M0ZM54_SOLTU	0	Ribosome biogenesis protein WDR12 homolog {ECO:0000256\|HAMAP-Rule:MF_03029}
TAIR10	AT5G15550.1	1E-164	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	33200150	33210472	+
GWHAAZE00000004	mRNA	33200150	33210472	+
GWHAAZE00000004	exon	33200150	33200312	+
GWHAAZE00000004	exon	33201238	33201338	+
GWHAAZE00000004	exon	33201766	33201872	+
GWHAAZE00000004	exon	33206975	33207010	+
GWHAAZE00000004	exon	33207144	33207229	+
GWHAAZE00000004	exon	33207935	33208002	+
GWHAAZE00000004	exon	33208096	33208206	+
GWHAAZE00000004	exon	33208302	33208427	+
GWHAAZE00000004	exon	33208798	33208941	+
GWHAAZE00000004	exon	33209741	33209786	+
GWHAAZE00000004	exon	33210028	33210164	+
GWHAAZE00000004	exon	33210264	33210299	+
GWHAAZE00000004	exon	33210380	33210472	+
GWHAAZE00000004	CDS	33200150	33200312	+
GWHAAZE00000004	CDS	33201238	33201338	+
GWHAAZE00000004	CDS	33201766	33201872	+
GWHAAZE00000004	CDS	33206975	33207010	+
GWHAAZE00000004	CDS	33207144	33207229	+
GWHAAZE00000004	CDS	33207935	33208002	+
GWHAAZE00000004	CDS	33208096	33208206	+
GWHAAZE00000004	CDS	33208302	33208427	+
GWHAAZE00000004	CDS	33208798	33208941	+
GWHAAZE00000004	CDS	33209741	33209786	+
GWHAAZE00000004	CDS	33210028	33210164	+
GWHAAZE00000004	CDS	33210264	33210299	+
GWHAAZE00000004	CDS	33210380	33210472	+

Transcript Sequence
>GWHTAAZE015369 ATGGAGATCGATGGAGATGTTGAGGAGGCATCAAGGCGAGTCCAAGTCCGCTTTATTACGAAACTGAAGGCGCCTTTCAAAGCTCCGACTACTGCTATTGCTATTCCATCTAATCTCACCAGGTTGGGCCTCTCTGCCATCGTCAACAACTTTCTCAAAGCAGGAAAAGATGATTGGAATTCTGAACCATTTGATTTTCTCATCGATGGAGAGTTGGTTCGGATGTCGCTTGAAAATTTCCTCCTTGCCAAGGGCATTTCGGCGGAAAGGGTGTTAGAAATTGAATACATAAGAGCAGTGGTCCCGCGTAAAGAAGAAGAGCCTTCTTTACATGATGATTGGGTCAGTGCAGTTGATGCTTCAAATCCTGGGCTCATTTTGACAGGGTGCTATGATGGTTTAGGAAGGATATGGAAAGCCGCTGGTTTGTGTACGCATATATTAGAAGGACATAGTGGTGCAATTACTTCAGTTAGTATCATCAATTCAAGAGCCGTGGAAAGTGGTACCGATCTACTTGTAGCTACTGGTTCAAAAGATAGGACTTTGAGGCTTTGGATGTTGGATGCAGATGAGTCCATAGATCATCCTACTAAAGTTACAGCTTTTAGAACTCTGCGGGGGCATAGTGCTTCGGTGCAGAGCATTGCACCACAGGCTTCTGGAGATATGGTCTGTTCTGGTTCGTGGGATTGTAGAATCAATGTATGGCATACAAAGGGGTCTGATACAGGAGCCGACTTAGTGCCAGTTAAGAAGAGAAGAAAAGATAGTGAAGATGTGGATTCACAATCAGAGGGAGAGGCTGTATCAACACTTGTGGGGCATACGCAATGCGTATCTTCAGTGGTTTGGCCGGAACGTGAAACAATATATTCTGCATCATGGGATCATTCTATTAGAAGATGGGATGTTGAAACAGGAAAAGATTCTTTGAATATGAGAATAGATACTGAACTATTTTCTCTTGCTACAGTTTTGTGGAAAGGAACATCGGCTCCTATCTATCAATTCTCATCACACACTTCCTGGATATCGGCTTGCAAATGGCACGATAAATCATGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTAATGCTATGGGATCTAAGAACTGCGTGGCCAGTGACCATCATTGATTCACACAAGGACAAGGTATTATGTGCCGACTGGTGGAAAGGTGATAGTGTGGTTAGTGGTGGGGTAGATTCGAAGCTTTGCATTTCTTCCGAAGTTGCTGTGCAATGA

Network for GWHGAAZE015353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08154.13	NLE	14	81	7.40E-19
PF00400.33	WD40	144	186	7.80E-06
PF00400.33	WD40	203	237	1.10E-05
PF00400.33	WD40	268	304	0.018
PF00400.33	WD40	334	371	0.01

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	biological_process	ribosome biogenesis
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.848
	SRR3591706	second leaf	4.465
	SRR3591707	mature leaf	6.974
	SRR3591708	Shoot apex	10.360
	SRR3591709	Stem	11.121
	SRR3591710	White floral bud	26.110
	SRR3591711	White flower	28.059
	SRR3591712	Green floral bud	26.618
	SRR3591713	Yellow flower	28.304
SRP173429	SRR8316895	Juvenile bud stage	12.570
	SRR8316896	Juvenile bud stage	15.369
	SRR8316897	Juvenile bud stage	12.606
	SRR8316894	Third green stage	7.329
	SRR8316900	Third green stage	21.962
	SRR8316901	Third green stage	20.862
	SRR8316898	Complete white stage	8.573
	SRR8316899	Complete white stage	29.270
	SRR8316903	Complete white stage	12.763
	SRR8316902	Silver flowering stage	11.080
	SRR8316904	Silver flowering stage	13.737
	SRR8316905	Silver flowering stage	5.332
	SRR8316906	Gold flowering stage	15.923
	SRR8316907	Gold flowering stage	18.666
	SRR8316908	Gold flowering stage	26.172
SRP132670	SRR6706286	Control	21.172
	SRR6706287	Light intensity 50%	20.697
	SRR6706288	Light intensity 20%	23.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.549
	CNS0095593	Slightly white alabastrum(diploid) 2	11.502
	CNS0095594	Slightly white alabastrum(diploid) 3	13.025
	CNS0095595	Whole white alabastrum(diploid) 2	10.888
	CNS0095596	Whole white alabastrum(diploid) 3	12.393
	CNS0095597	Whole white alabastrum(diploid) 4	9.792
	CNS0095598	Silvery flower (diploied) 1	10.333
	CNS0095599	Silvery flower (diploied) 2	9.351
	CNS0095600	Silvery flower (diploied) 3	13.995
	CNS0095601	Golden flower (diploid) 1	10.492
	CNS0095602	Golden flower (diploid) 2	11.318
	CNS0095603	Golden flower (diploid) 3	12.277
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.694
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.299
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.206
	CNS0095610	Silvery flower (tetraploid) 1	35.441
	CNS0095611	Silvery flower (tetraploid) 2	30.391
	CNS0095612	Silvery flower (tetraploid) 3	32.742
	CNS0095613	Golden flower (tetraploid) 1	17.833
	CNS0095614	Golden flower (tetraploid) 2	30.350
	CNS0095615	Golden flower (tetraploid) 3	25.591
CRA001975	CRR073297	Stem 1	19.910
	CRR073298	Stem 2	22.886
	CRR073299	Stem 3	18.251
	CRR073300	Leaf 1	20.220
	CRR073301	Leaf 2	20.093
	CRR073302	Leaf 3	21.387
	CRR073303	Juvenile bud 1	19.200
	CRR073304	Juvenile bud 2	14.197
	CRR073305	Juvenile bud 3	21.921
	CRR073306	Third green 1	11.644
	CRR073307	Third green 2	8.994
	CRR073308	Third green 3	11.077
	CRR073309	Second white 1	10.444
	CRR073310	Second white 2	12.532
	CRR073311	Second white 3	11.352
	CRR073312	Silver flowering 1	15.620
	CRR073313	Silver flowering 2	13.206
	CRR073314	Silver flowering 3	14.885
	CRR073315	Gold flowering 1	10.210
	CRR073316	Gold flowering 2	13.318
	CRR073317	Gold flowering 3	9.971
	CRR073318	Tawny withering 1	13.899
	CRR073319	Tawny withering 2	15.918
	CRR073320	Tawny withering 3	12.005