Gene detail

Detail information of GWHGAAZE015354

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009790312.1	0	PREDICTED: ribosome biogenesis protein WDR12 homolog [Nicotiana sylvestris]
Swissprot	tr\|A8IR43\|WDR12_CHLRE	2E-85	Ribosome biogenesis protein WDR12 homolog {ECO:0000255\|HAMAP-Rule:MF_03029}
trEMBL	tr\|M0ZM54\|M0ZM54_SOLTU	0	Ribosome biogenesis protein WDR12 homolog {ECO:0000256\|HAMAP-Rule:MF_03029}
TAIR10	AT5G15550.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	33636964	33646590	-
GWHAAZE00000004	mRNA	33636964	33646590	-
GWHAAZE00000004	exon	33646428	33646590	-
GWHAAZE00000004	exon	33645408	33645508	-
GWHAAZE00000004	exon	33644868	33644974	-
GWHAAZE00000004	exon	33640406	33640441	-
GWHAAZE00000004	exon	33640187	33640272	-
GWHAAZE00000004	exon	33639419	33639486	-
GWHAAZE00000004	exon	33639215	33639325	-
GWHAAZE00000004	exon	33638991	33639116	-
GWHAAZE00000004	exon	33638479	33638622	-
GWHAAZE00000004	exon	33637524	33637632	-
GWHAAZE00000004	exon	33637272	33637408	-
GWHAAZE00000004	exon	33637137	33637172	-
GWHAAZE00000004	exon	33636964	33637056	-
GWHAAZE00000004	CDS	33646428	33646590	-
GWHAAZE00000004	CDS	33645408	33645508	-
GWHAAZE00000004	CDS	33644868	33644974	-
GWHAAZE00000004	CDS	33640406	33640441	-
GWHAAZE00000004	CDS	33640187	33640272	-
GWHAAZE00000004	CDS	33639419	33639486	-
GWHAAZE00000004	CDS	33639215	33639325	-
GWHAAZE00000004	CDS	33638991	33639116	-
GWHAAZE00000004	CDS	33638479	33638622	-
GWHAAZE00000004	CDS	33637524	33637632	-
GWHAAZE00000004	CDS	33637272	33637408	-
GWHAAZE00000004	CDS	33637137	33637172	-
GWHAAZE00000004	CDS	33636964	33637056	-

Transcript Sequence
>GWHTAAZE015370 ATGGAGATCGATGGAGATGTTGAGGAGGCATCAAGGCGAGTCCAAGTCCGCTTTATTACGAAACTGAAGGCGCCTTTCAAAGCTCCGACTACTGCTATTGCTATTCCCTCTAATCTCACCAGGTTGGGCCTCTCTGCCATTGTCAACAACTTTCTCAAAGCAGGAAAAGATGATTGGAATTCTGAACCATTTGATTTTCTCATCGATGGAGAGTTGGTTCGGATGTCGCTTGAAAATTTCCTCCTTGCCAAGGGCATTTCGGCGGAAAGGGTGTTAGAAATTGAATACATAAGAGCAGTGGTCCCCCGCAAAGAAGAAGAGCCTTCTTTACATGATGATTGGGTCAGTGCAGTTGATGCTTCAAATCCTGGGCTCATTTTGACAGGGTGCTATGATGGTTTAGGAAGGATATGGAAAGCCGCTGGTTTGTGTACGCATATATTAGAAGGACATAGTGGTGCAATTACTTCAGTTAGTATCATCAATCCAAGAGCCGTGGAAAGTGGTACCGATCTACTTGTAGCTACTGGTTCAAAAGATAGGACTTTGAGGCTTTGGATGTTGGATGCAGATGAGTACATAGATCATCCTACTAAGGTTACAGCTTTTAGAACTCTGCGGGGGCATAGTGCTTCTGTGCAGAGCATTGCACCACAGGCTTCTGGAGATATGGTCTGTTCTGGTTCGTGGGATTCTAGAATCAATGTATGGCATACAAAGGGGTCTGATACAGGAGCCGACTTAGTGTCAGTTAAGAAGAGAAGAAAAGATAGTGAAGATGTGGATTCACAATCAGAGGGAGAGGCTGTATCAACACTTGTGGGGCATACGCAATGCGTATCTTCAGTGGTTTGGCCGGAACGTGGAACAATATATTCTGCATCATGGGATCATTCTATTAGAAGATGGGATGTTGAAACAGGAAAAGATTCTATGAATATGTTTTGTGGAAAGGTCTTCAATTGCCTTGATGTTGGCGGAGAAAGTTCTGCCCTCATTGCTGCTGGCTGTTCTGATCCTATCCTTAGGATATGGGATCCCCGCAAACCAGGAACATCGGCTCCTATCTATCAATTCTCATCACACACTTCCTGGATATCGGCTTGCAAATGGCACGATAAATCATGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTAATGCTATGGGATCTAAGAACTGCGTGGCCAGTGACCATCATTGATTCACACAAGGACAAGGTATTATGTGCAGACTGGTGGAAAGGTGATAGTGTGGTTAGTGGTGGGGTAGATTCGAAGCTTTGCATTTCTTCCGAAGTTGCTGTGCAATGA

Network for GWHGAAZE015354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08154.13	NLE	14	81	7.90E-19
PF00400.33	WD40	144	186	9.00E-06
PF00400.33	WD40	203	237	2.50E-05
PF00400.33	WD40	268	304	0.012
PF00400.33	WD40	321	346	0.15
PF00400.33	WD40	355	392	0.011

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0042254	biological_process	ribosome biogenesis
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.580
	SRR3591706	second leaf	19.332
	SRR3591707	mature leaf	19.518
	SRR3591708	Shoot apex	42.748
	SRR3591709	Stem	36.148
	SRR3591710	White floral bud	28.079
	SRR3591711	White flower	31.406
	SRR3591712	Green floral bud	25.120
	SRR3591713	Yellow flower	33.660
SRP173429	SRR8316895	Juvenile bud stage	16.039
	SRR8316896	Juvenile bud stage	24.183
	SRR8316897	Juvenile bud stage	12.722
	SRR8316894	Third green stage	9.153
	SRR8316900	Third green stage	28.422
	SRR8316901	Third green stage	23.565
	SRR8316898	Complete white stage	11.193
	SRR8316899	Complete white stage	38.089
	SRR8316903	Complete white stage	13.989
	SRR8316902	Silver flowering stage	11.673
	SRR8316904	Silver flowering stage	14.261
	SRR8316905	Silver flowering stage	5.268
	SRR8316906	Gold flowering stage	22.983
	SRR8316907	Gold flowering stage	22.839
	SRR8316908	Gold flowering stage	23.097
SRP132670	SRR6706286	Control	31.600
	SRR6706287	Light intensity 50%	30.267
	SRR6706288	Light intensity 20%	34.160
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.706
	CNS0095593	Slightly white alabastrum(diploid) 2	15.521
	CNS0095594	Slightly white alabastrum(diploid) 3	14.837
	CNS0095595	Whole white alabastrum(diploid) 2	14.233
	CNS0095596	Whole white alabastrum(diploid) 3	16.875
	CNS0095597	Whole white alabastrum(diploid) 4	13.785
	CNS0095598	Silvery flower (diploied) 1	13.498
	CNS0095599	Silvery flower (diploied) 2	12.166
	CNS0095600	Silvery flower (diploied) 3	20.375
	CNS0095601	Golden flower (diploid) 1	13.306
	CNS0095602	Golden flower (diploid) 2	17.674
	CNS0095603	Golden flower (diploid) 3	16.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.763
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.437
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.037
	CNS0095610	Silvery flower (tetraploid) 1	5.286
	CNS0095611	Silvery flower (tetraploid) 2	3.823
	CNS0095612	Silvery flower (tetraploid) 3	4.024
	CNS0095613	Golden flower (tetraploid) 1	3.530
	CNS0095614	Golden flower (tetraploid) 2	5.277
	CNS0095615	Golden flower (tetraploid) 3	3.834
CRA001975	CRR073297	Stem 1	33.289
	CRR073298	Stem 2	29.926
	CRR073299	Stem 3	29.183
	CRR073300	Leaf 1	36.699
	CRR073301	Leaf 2	32.653
	CRR073302	Leaf 3	29.741
	CRR073303	Juvenile bud 1	26.553
	CRR073304	Juvenile bud 2	25.930
	CRR073305	Juvenile bud 3	29.430
	CRR073306	Third green 1	12.012
	CRR073307	Third green 2	12.238
	CRR073308	Third green 3	13.601
	CRR073309	Second white 1	14.844
	CRR073310	Second white 2	12.870
	CRR073311	Second white 3	12.885
	CRR073312	Silver flowering 1	14.016
	CRR073313	Silver flowering 2	13.258
	CRR073314	Silver flowering 3	13.955
	CRR073315	Gold flowering 1	15.547
	CRR073316	Gold flowering 2	16.139
	CRR073317	Gold flowering 3	15.857
	CRR073318	Tawny withering 1	23.729
	CRR073319	Tawny withering 2	20.099
	CRR073320	Tawny withering 3	23.946