Detail information of GWHGAAZE015369


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009791791.11.5711E-142PREDICTED: zinc finger CCCH domain-containing protein 20-like [Nicotiana sylvestris]
Swissprottr|Q9M0G2|C3H49_ARATH1E-109Zinc finger CCCH domain-containing protein 49
trEMBLtr|A0A067KPP4|A0A067KPP4_JATCU2E-141Uncharacterized protein {ECO:0000313|EMBL:KDP33764.1}
TAIR10AT4G29190.18E-82Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3658236136583320-
GWHAAZE00000004mRNA3658236136583320-
GWHAAZE00000004exon3658236136583320-
GWHAAZE00000004CDS3658236136583320-
Transcript Sequence

Network for GWHGAAZE015369

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH831031.50E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.296
SRR3591706second leaf4.525
SRR3591707mature leaf4.911
SRR3591708Shoot apex14.704
SRR3591709Stem17.713
SRR3591710White floral bud2.915
SRR3591711White flower5.018
SRR3591712Green floral bud0.946
SRR3591713Yellow flower0.755
SRP173429 SRR8316895Juvenile bud stage 1.845
SRR8316896Juvenile bud stage 2.149
SRR8316897Juvenile bud stage 0.260
SRR8316894Third green stage 0.792
SRR8316900Third green stage 0.495
SRR8316901Third green stage 0.871
SRR8316898Complete white stage 0.101
SRR8316899Complete white stage 1.998
SRR8316903Complete white stage 0.767
SRR8316902Silver flowering stage0.411
SRR8316904Silver flowering stage0.291
SRR8316905Silver flowering stage0.072
SRR8316906Gold flowering stage 0.396
SRR8316907Gold flowering stage 0.756
SRR8316908Gold flowering stage 0.470
SRP132670SRR6706286Control0.552
SRR6706287Light intensity 50%0.629
SRR6706288Light intensity 20%0.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.803
CNS0095593Slightly white alabastrum(diploid) 20.877
CNS0095594Slightly white alabastrum(diploid) 32.580
CNS0095595Whole white alabastrum(diploid) 22.852
CNS0095596Whole white alabastrum(diploid) 32.080
CNS0095597Whole white alabastrum(diploid) 41.114
CNS0095598Silvery flower (diploied) 14.461
CNS0095599Silvery flower (diploied) 21.033
CNS0095600Silvery flower (diploied) 31.082
CNS0095601Golden flower (diploid) 15.104
CNS0095602Golden flower (diploid) 23.134
CNS0095603Golden flower (diploid) 33.929
CNS0095604Slightly white alabastrum(tetraploid) 15.013
CNS0095605Slightly white alabastrum(tetraploid) 23.726
CNS0095606Slightly white alabastrum(tetraploid) 38.987
CNS0095607Whole white alabastrum(tetraploid) 16.040
CNS0095608Whole white alabastrum(tetraploid) 21.525
CNS0095609Whole white alabastrum(tetraploid) 30.961
CNS0095610Silvery flower (tetraploid) 12.690
CNS0095611Silvery flower (tetraploid) 25.591
CNS0095612Silvery flower (tetraploid) 32.850
CNS0095613Golden flower (tetraploid) 10.670
CNS0095614Golden flower (tetraploid) 21.640
CNS0095615Golden flower (tetraploid) 30.765
CRA001975CRR073297Stem 16.170
CRR073298Stem 23.294
CRR073299Stem 310.181
CRR073300Leaf 11.278
CRR073301Leaf 22.116
CRR073302Leaf 31.280
CRR073303Juvenile bud 10.334
CRR073304Juvenile bud 20.206
CRR073305Juvenile bud 30.420
CRR073306Third green 11.744
CRR073307Third green 22.133
CRR073308Third green 31.698
CRR073309Second white 10.381
CRR073310Second white 20.991
CRR073311Second white 30.131
CRR073312Silver flowering 10.049
CRR073313Silver flowering 20.166
CRR073314Silver flowering 31.050
CRR073315Gold flowering 15.334
CRR073316Gold flowering 27.923
CRR073317Gold flowering 37.332
CRR073318Tawny withering 167.043
CRR073319Tawny withering 232.153
CRR073320Tawny withering 364.249