Gene detail

Detail information of GWHGAAZE015395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013011.1	0	Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	0	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|A0A061GL86\|A0A061GL86_THECC	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G19730.1	6E-161	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	37566609	37571644	+
GWHAAZE00000004	mRNA	37566609	37571644	+
GWHAAZE00000004	exon	37566609	37566808	+
GWHAAZE00000004	exon	37567617	37567806	+
GWHAAZE00000004	exon	37568400	37568606	+
GWHAAZE00000004	exon	37570022	37570257	+
GWHAAZE00000004	exon	37571497	37571644	+
GWHAAZE00000004	CDS	37566609	37566808	+
GWHAAZE00000004	CDS	37567617	37567806	+
GWHAAZE00000004	CDS	37568400	37568606	+
GWHAAZE00000004	CDS	37570022	37570257	+
GWHAAZE00000004	CDS	37571497	37571644	+

Transcript Sequence
>GWHTAAZE015411 ATGAAGTGGGTCAAATTTGTTGGCACACTTAAACACTCCCTTTTTAACACAGCCAAGAACAAGCTTTTTCCTTCTTATACTCTCACCGTCAATAAGAATCCGGAGACCGGAGACTTCACGTCGATTCAAGATGCAATTGATTCTCTCCCTTTTATTAATCTTGTGAGAGTTGTGATTCAAGTTCATGCTGGTGTTTATGAGGAGAAGGTAAACATATCATCATTGAAATCATTCATAACAATAGAAGGAGAAGGAGCAGAGAAGACAGTGGTTCAATGGGGAGATACAGCTCAAACAATTGGGCCAAATGGGAAGCCTCTTGGTACCTTTGGTTCTGCCACTTTTGCTGTCAATTCCCCATATTTCATAGCCAAGAACATCACTTTTAAGAATACATTTCCGGTACCAGCACCGGGAGCTATTGGAAAGCAAGCAGTGGCATTTAGAATATCAGGCGATAATGCAGTTTTTCTAGGCTGCAGATTCCTGGGTGCACAAGACACCCTCTATGACCACTCGGGCAGGCATTATTACAAGGATTCCTACATTGAAGGCTCTGTCGACTTTATATTCGGCAATGCTCTTTCTCTATTTGAGGGGTGTGAGTTGCATGCAGTAGCACAAGTAATAGGTGCAGTTACAGCACAAGGGAGGAGCAGCAACATAGAGGACACTGGATTCTCATTTCTCAAGTGTAAAGTGACTGGGTCTGGGGCTCTCTACCTTGGGAGGGCATGGGGTCCCTTTTCTAGGGTAGTCTTTGCCTATACTTATATGGACAACATTATCATCCCCAAAGGCTGGTATAATTGGGGTGACCCTAACCGTGAAATGACAGTGTTTTATGGGCAATACAAGTGTAGTGGAGCAGGAGCAAGTTTTGCAGGAAGAGTGACATGGTCAAGAGAACTCACTGATGAAGAAGCCCAGCCTTTTCTTTCCCTTAGCTTTGTTGATGGCTCTGAATGGATTAAACTTTAG

Network for GWHGAAZE015395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	34	320	2.10E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.846
	SRR3591706	second leaf	5.530
	SRR3591707	mature leaf	0.603
	SRR3591708	Shoot apex	3.260
	SRR3591709	Stem	0.514
	SRR3591710	White floral bud	3.218
	SRR3591711	White flower	2.527
	SRR3591712	Green floral bud	3.222
	SRR3591713	Yellow flower	0.522
SRP173429	SRR8316895	Juvenile bud stage	1.385
	SRR8316896	Juvenile bud stage	1.463
	SRR8316897	Juvenile bud stage	0.807
	SRR8316894	Third green stage	0.954
	SRR8316900	Third green stage	3.050
	SRR8316901	Third green stage	3.943
	SRR8316898	Complete white stage	8.289
	SRR8316899	Complete white stage	4.641
	SRR8316903	Complete white stage	11.428
	SRR8316902	Silver flowering stage	7.867
	SRR8316904	Silver flowering stage	9.334
	SRR8316905	Silver flowering stage	4.328
	SRR8316906	Gold flowering stage	14.006
	SRR8316907	Gold flowering stage	15.220
	SRR8316908	Gold flowering stage	13.959
SRP132670	SRR6706286	Control	4.306
	SRR6706287	Light intensity 50%	3.871
	SRR6706288	Light intensity 20%	3.895
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.557
	CNS0095593	Slightly white alabastrum(diploid) 2	2.208
	CNS0095594	Slightly white alabastrum(diploid) 3	4.214
	CNS0095595	Whole white alabastrum(diploid) 2	3.126
	CNS0095596	Whole white alabastrum(diploid) 3	4.935
	CNS0095597	Whole white alabastrum(diploid) 4	2.940
	CNS0095598	Silvery flower (diploied) 1	6.801
	CNS0095599	Silvery flower (diploied) 2	11.231
	CNS0095600	Silvery flower (diploied) 3	11.724
	CNS0095601	Golden flower (diploid) 1	4.557
	CNS0095602	Golden flower (diploid) 2	10.111
	CNS0095603	Golden flower (diploid) 3	9.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.624
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.775
	CNS0095610	Silvery flower (tetraploid) 1	6.849
	CNS0095611	Silvery flower (tetraploid) 2	3.723
	CNS0095612	Silvery flower (tetraploid) 3	3.908
	CNS0095613	Golden flower (tetraploid) 1	2.892
	CNS0095614	Golden flower (tetraploid) 2	2.827
	CNS0095615	Golden flower (tetraploid) 3	1.274
CRA001975	CRR073297	Stem 1	2.568
	CRR073298	Stem 2	2.964
	CRR073299	Stem 3	2.401
	CRR073300	Leaf 1	3.890
	CRR073301	Leaf 2	4.085
	CRR073302	Leaf 3	3.348
	CRR073303	Juvenile bud 1	3.476
	CRR073304	Juvenile bud 2	4.554
	CRR073305	Juvenile bud 3	4.957
	CRR073306	Third green 1	1.842
	CRR073307	Third green 2	1.308
	CRR073308	Third green 3	1.510
	CRR073309	Second white 1	2.843
	CRR073310	Second white 2	2.305
	CRR073311	Second white 3	1.510
	CRR073312	Silver flowering 1	1.226
	CRR073313	Silver flowering 2	0.962
	CRR073314	Silver flowering 3	1.905
	CRR073315	Gold flowering 1	1.846
	CRR073316	Gold flowering 2	3.103
	CRR073317	Gold flowering 3	1.127
	CRR073318	Tawny withering 1	11.019
	CRR073319	Tawny withering 2	9.896
	CRR073320	Tawny withering 3	5.602