Gene detail

Detail information of GWHGAAZE015404

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011078243.1	PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|F6HGY4\|F6HGY4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51482.1}
TAIR10	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	38024146	38028836	-
GWHAAZE00000004	mRNA	38024146	38028836	-
GWHAAZE00000004	exon	38024146	38024573	-
GWHAAZE00000004	exon	38026214	38028836	-
GWHAAZE00000004	CDS	38026214	38028836	-
GWHAAZE00000004	CDS	38024146	38024573	-

Transcript Sequence
>GWHTAAZE015420 ATGATGAAAACACCTCCGCCATCTGTCGCCGTCCTCTCTTTCCTTCTCTTCATCCTACCCTTCCATGTAAACTCCCAAACCATCAATGGCCAAGAACAATCAATCCTTCTCAACCTAAAACAATATTGGTCCAATCCATCATCAATCGACCACTGGGCCCCATCATCCAATTCCACCGCCCACTGTACCTGGAGGGGGATCACCTGCACCGGCGGTTCCGTCACCGGAATCTCACTCGTCGATAGAGGCATCGCCGGAGATATCCCAGCGTTCATTTGCGACCTCAAAAACCTCACCACCATCGATCTCTCGTTTAATGAAATCCCCGGTCCTTTCCCGACAGTTCTCTATAACTGTTCCAAGCTTCAACACTTAGACCTCTCTCAAAACTTTTTTGTTGGCCGGATTCCGGCTGACATTGATCGGTTATCGCCTCGGCTTCAGTACCTCAGCCTCAGTGCCAACAACTTCACTGGTGACATTCCGGCAGCTATTGCCCGATTCCCGGAGCTCACCACTCTTTCTCTATATCAAAATTTGTTTAACGGCTCATTCCCGCCGGAAATCGGGAATTTGTCGAATCTTGAATATCTTGAATTGGCCTTTAATGGGTTTACTCCATCAACGATTCCGGGGAGTTTAGCGAATTTGACGAAGCTGAGAAGTTTGTACATGACCGAATCAAAGCTTATCGGAGAAATCCCGGAGAGTATCGGAAGTTTGACCGCCCTCGAGTTCATCGATTTATCTGTAAATGATTTGAGTGGTAATATCCCAAGAGGGTTCTTCTTGTTGAAGAACTTAACTGAGATATATCTTTACCGTAACGGGTTGACTGGTTCGATTCCTCAATCTGTTGAAGCCTTGAATTTGAAGGTAATTGATCTATCTCAAAATAATTTGACCGGGCCAATACCGGAAGGTTTCGGAAATCAGACGAAGCTAACGAATTTGACCTTGTTATACAATCAATTATCCGGCGAAATTCCAGACAGTATTAGCCGGCTGCCGGAGCTGAAAAATGTCCGTTTGTTTGGCAACAATCTGAGCGGAAGAATACCGCCGGACTTTGGGCGATTTTCAAAGCTCATAGTCTTTGAAGTTGACAACAACCAATTAGTCGGAGGGTTGCCGGAAAATTTATGCGCAGGTGGTGTGTTGGCAGGTGCTGTTGCGTCTGTCAACAATCTTAGTGGCGAAATCCCCAAATCACTTGGGAATTGTAGTAGTTTGTTGACTCTTCAGGTTTTTAATAATCGGTTTTCCGGTCGGATTCCCGATGGTTTGTGGACATCTCCAAATATGATGATCTTGAGGCTAAGCGATAATTTTTTTACCGGTCAGTTACCGGAAAAAATCTCGTCGAATTTAACCCTAATTGAAATCAGCAACAATAATTTCTCTGGCAAGATTCCGGCCAGTGTGTCTTCTTGGAACAATTTGAGGGAGTTGAAAGCAAGCAATAATTTGTTCGCGGGTACAATTCCTCAAGAACTCACTTCTCTTCCATTTCTGGGGACACTTTTGCTCGATTGGAATCAACTTTCCGGGCAAATTCCATCAAATATTATTTCCTGGACGTCGCTATCATCTTTAAGTCTCAGTCATAACCAACTCCATGGCGAAATTCCTGCCGGACTGGGATTTTTACCTGTCCTCACAGAGCTGGACTTGTCGGCAAATGATCTTTCTGGTCAAATTCCGGCCGAAGTTGGAAAGTTGAGGCTAACTTCTCTCAATCTCTCCTCCAATCTCCTCATCGGAAAACTTCCCGGTCCATTTGAAAACGGAGCTTTCGAAAACAGCTTCTTGAACAATCCCGGCCTTTGTACAGATAACCCATCACTAGGCCTCCAAACTTGCCGATCCAATCCAAGAAATACCCGCAAAATTTCCTCCCAGTTCATTATTGTTGTCACAAGCATTGCGTTTGTGGTTCTCGTAGCGGCTCTCCTTTTCTCTCTCTATCTCATCAAAAATTTTAGAAAGGAAAAGCGCGGGTTAGAAACGTGGAAGCTCACTTCTTTCCAAAGACTCAGTTTCACTGAATCCACCATTTTGTCGAGTTTGACAGACAATAACACAATCGGAAGTGGCGGGTCTGGGAAAGTATACCGAGTAGCAATTAACCGTTCAGGTGAATCGGTCGCGGTTAAGAGGATATGGACCAACATGAAACTGGACCATCATTTGGAGAAACAATTTAATTCCGAAGTTGAGATACTAAGCACAATTCGACACTCCAACATAGTGAAACTAATGTGCTGCATTTCAAGTGAGAAATCGAAGCTCCTTGTGTACCCATATCTTGGAAACCAGAGTTTGGATCAGTGGCTTCATCGGAAGGAAAGATCGTGGAGCGGCTCAGCCTCGGTGCACCATGTAGTTTTGGACTGGCCTAAGAGGCTGCAGATTGCAGTGGGAGCGGCTCGCGGGCTGTGCTACATGCACCACGACTGCTTGCCTCCGATCATTCACCGGGATGTCAAATCGAGCAACATACTGTTGGATTCAGAATTCAATGCGAAAATTGCGGATTTCGGTCTAGCGCGGATCTTGATCAAGGATGGTGGGCTTAATACAATGTCAGCTGTGGCGGGATCTTTCGGCTACATAGCTCCCGAGTATGCACAAACAACAAGAGTGAACGAAAAGATAGATGTGTATAGCTTCGGGGTGGTCCTACTAGAGCTAGTGACAGGAAAAGAAGCAAATAAGGGAGACGAGGATACCAATCTAGCTGAATGGGCATGGCAACATATTCAAAAAGGGTACCCCATAGCCGATGCCTTGGACTCCGACATCAAGGAGCCTTGTTACTTGGATGAGATGATTGACGTTTTTAAACTCGGGATCATTTGTACCGGAACACTTCCATCGACCAGGCCTAGCATGAAAGAGGTTTTGCAGATTTTGCTTCGGTGTAGCCCAATGCTGGCATTTGGGGAGAAGAATGTTGTAAGTGAGGTGGATTCTCTTCCCCTTCTTAAGAACTCTAAGCGTGAGAGGGAGTTAGAAGGTGAAAATGATGGTTTGGAGTCAATTGTTTGA

Network for GWHGAAZE015404

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	4.70E-05
PF00560.34	LRR_1	121	142	0.23
PF13855.7	LRR_8	145	204	2.90E-07
PF13855.7	LRR_8	290	349	2.60E-06
PF00560.34	LRR_1	575	596	1.8
PF00069.26	Pkinase	692	970	3.10E-45

Protein Sequence

>GWHPAAZE015412
MMKTPPPSVAVLSFLLFILPFHVNSQTINGQEQSILLNLKQYWSNPSSIDHWAPSSNSTAHCTWRGITCTGGSVTGISLVDRGIAGDIPAFICDLKNLTTIDLSFNEIPGPFPTVLYNCSKLQHLDLSQNFFVGRIPADIDRLSPRLQYLSLSANNFTGDIPAAIARFPELTTLSLYQNLFNGSFPPEIGNLSNLEYLELAFNGFTPSTIPGSLANLTKLRSLYMTESKLIGEIPESIGSLTALEFIDLSVNDLSGNIPRGFFLLKNLTEIYLYRNGLTGSIPQSVEALNLKVIDLSQNNLTGPIPEGFGNQTKLTNLTLLYNQLSGEIPDSISRLPELKNVRLFGNNLSGRIPPDFGRFSKLIVFEVDNNQLVGGLPENLCAGGVLAGAVASVNNLSGEIPKSLGNCSSLLTLQVFNNRFSGRIPDGLWTSPNMMILRLSDNFFTGQLPEKISSNLTLIEISNNNFSGKIPASVSSWNNLRELKASNNLFAGTIPQELTSLPFLGTLLLDWNQLSGQIPSNIISWTSLSSLSLSHNQLHGEIPAGLGFLPVLTELDLSANDLSGQIPAEVGKLRLTSLNLSSNLLIGKLPGPFENGAFENSFLNNPGLCTDNPSLGLQTCRSNPRNTRKISSQFIIVVTSIAFVVLVAALLFSLYLIKNFRKEKRGLETWKLTSFQRLSFTESTILSSLTDNNTIGSGGSGKVYRVAINRSGESVAVKRIWTNMKLDHHLEKQFNSEVEILSTIRHSNIVKLMCCISSEKSKLLVYPYLGNQSLDQWLHRKERSWSGSASVHHVVLDWPKRLQIAVGAARGLCYMHHDCLPPIIHRDVKSSNILLDSEFNAKIADFGLARILIKDGGLNTMSAVAGSFGYIAPEYAQTTRVNEKIDVYSFGVVLLELVTGKEANKGDEDTNLAEWAWQHIQKGYPIADALDSDIKEPCYLDEMIDVFKLGIICTGTLPSTRPSMKEVLQILLRCSPMLAFGEKNVVSEVDSLPLLKNSKRERELEGENDGLESIV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.047
	SRR3591706	second leaf	0.262
	SRR3591707	mature leaf	1.133
	SRR3591708	Shoot apex	0.029
	SRR3591709	Stem	0.985
	SRR3591710	White floral bud	0.491
	SRR3591711	White flower	5.487
	SRR3591712	Green floral bud	0.239
	SRR3591713	Yellow flower	13.164
SRP173429	SRR8316895	Juvenile bud stage	0.560
	SRR8316896	Juvenile bud stage	1.060
	SRR8316897	Juvenile bud stage	0.265
	SRR8316894	Third green stage	0.950
	SRR8316900	Third green stage	0.437
	SRR8316901	Third green stage	0.570
	SRR8316898	Complete white stage	0.380
	SRR8316899	Complete white stage	1.291
	SRR8316903	Complete white stage	0.941
	SRR8316902	Silver flowering stage	5.816
	SRR8316904	Silver flowering stage	9.353
	SRR8316905	Silver flowering stage	4.061
	SRR8316906	Gold flowering stage	36.309
	SRR8316907	Gold flowering stage	28.964
	SRR8316908	Gold flowering stage	26.348
SRP132670	SRR6706286	Control	2.413
	SRR6706287	Light intensity 50%	2.137
	SRR6706288	Light intensity 20%	1.172
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.190
	CNS0095593	Slightly white alabastrum(diploid) 2	0.645
	CNS0095594	Slightly white alabastrum(diploid) 3	1.513
	CNS0095595	Whole white alabastrum(diploid) 2	0.785
	CNS0095596	Whole white alabastrum(diploid) 3	0.068
	CNS0095597	Whole white alabastrum(diploid) 4	0.694
	CNS0095598	Silvery flower (diploied) 1	1.881
	CNS0095599	Silvery flower (diploied) 2	1.605
	CNS0095600	Silvery flower (diploied) 3	6.986
	CNS0095601	Golden flower (diploid) 1	2.610
	CNS0095602	Golden flower (diploid) 2	15.272
	CNS0095603	Golden flower (diploid) 3	15.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.038
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.008
	CNS0095610	Silvery flower (tetraploid) 1	2.594
	CNS0095611	Silvery flower (tetraploid) 2	0.723
	CNS0095612	Silvery flower (tetraploid) 3	1.252
	CNS0095613	Golden flower (tetraploid) 1	2.783
	CNS0095614	Golden flower (tetraploid) 2	4.857
	CNS0095615	Golden flower (tetraploid) 3	4.793
CRA001975	CRR073297	Stem 1	1.767
	CRR073298	Stem 2	2.025
	CRR073299	Stem 3	0.944
	CRR073300	Leaf 1	1.613
	CRR073301	Leaf 2	1.599
	CRR073302	Leaf 3	1.540
	CRR073303	Juvenile bud 1	1.031
	CRR073304	Juvenile bud 2	0.656
	CRR073305	Juvenile bud 3	1.838
	CRR073306	Third green 1	1.176
	CRR073307	Third green 2	0.668
	CRR073308	Third green 3	1.399
	CRR073309	Second white 1	4.089
	CRR073310	Second white 2	5.991
	CRR073311	Second white 3	9.617
	CRR073312	Silver flowering 1	34.701
	CRR073313	Silver flowering 2	23.986
	CRR073314	Silver flowering 3	23.730
	CRR073315	Gold flowering 1	1.299
	CRR073316	Gold flowering 2	4.030
	CRR073317	Gold flowering 3	3.719
	CRR073318	Tawny withering 1	14.603
	CRR073319	Tawny withering 2	21.924
	CRR073320	Tawny withering 3	8.134