Detail information of GWHGAAZE015425


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU30717.13.8103E-180hypothetical protein MIMGU_mgv1a001145mg [Erythranthe guttata]
Swissprottr|O82190|RDR3_ARATH2E-140Probable RNA-dependent RNA polymerase 3
trEMBLtr|A0A022QPT4|A0A022QPT4_ERYGU1E-180Uncharacterized protein {ECO:0000313|EMBL:EYU30717.1}
TAIR10AT2G19910.17E-125RNA-dependent RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3910046739134689-
GWHAAZE00000004mRNA3910046739134689-
GWHAAZE00000004exon3913428139134689-
GWHAAZE00000004exon3913067439130833-
GWHAAZE00000004exon3913044639130584-
GWHAAZE00000004exon3913014139130281-
GWHAAZE00000004exon3912834339128417-
GWHAAZE00000004exon3912538539125541-
GWHAAZE00000004exon3912431239124468-
GWHAAZE00000004exon3912400139124088-
GWHAAZE00000004exon3912327139123414-
GWHAAZE00000004exon3912166939121775-
GWHAAZE00000004exon3911814939118297-
GWHAAZE00000004exon3911400239114227-
GWHAAZE00000004exon3911259939112760-
GWHAAZE00000004exon3910598439106146-
GWHAAZE00000004exon3910418239104415-
GWHAAZE00000004exon3910254239102629-
GWHAAZE00000004exon3910222739102361-
GWHAAZE00000004exon3910190739102088-
GWHAAZE00000004exon3910046739100715-
GWHAAZE00000004CDS3913428139134689-
GWHAAZE00000004CDS3913067439130833-
GWHAAZE00000004CDS3913044639130584-
GWHAAZE00000004CDS3913014139130281-
GWHAAZE00000004CDS3912834339128417-
GWHAAZE00000004CDS3912538539125541-
GWHAAZE00000004CDS3912431239124468-
GWHAAZE00000004CDS3912400139124088-
GWHAAZE00000004CDS3912327139123414-
GWHAAZE00000004CDS3912166939121775-
GWHAAZE00000004CDS3911814939118297-
GWHAAZE00000004CDS3911400239114227-
GWHAAZE00000004CDS3911259939112760-
GWHAAZE00000004CDS3910598439106146-
GWHAAZE00000004CDS3910418239104415-
GWHAAZE00000004CDS3910254239102629-
GWHAAZE00000004CDS3910222739102361-
GWHAAZE00000004CDS3910190739102088-
GWHAAZE00000004CDS3910046739100715-
Transcript Sequence

Network for GWHGAAZE015425

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0002


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05183.13RdRP3076856.60E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003968molecular_functionRNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.024
SRR3591706second leaf3.356
SRR3591707mature leaf1.645
SRR3591708Shoot apex5.939
SRR3591709Stem12.329
SRR3591710White floral bud1.668
SRR3591711White flower1.109
SRR3591712Green floral bud2.297
SRR3591713Yellow flower0.055
SRP173429 SRR8316895Juvenile bud stage 3.307
SRR8316896Juvenile bud stage 4.466
SRR8316897Juvenile bud stage 2.832
SRR8316894Third green stage 2.754
SRR8316900Third green stage 8.679
SRR8316901Third green stage 6.140
SRR8316898Complete white stage 1.265
SRR8316899Complete white stage 9.995
SRR8316903Complete white stage 2.035
SRR8316902Silver flowering stage0.562
SRR8316904Silver flowering stage0.944
SRR8316905Silver flowering stage0.120
SRR8316906Gold flowering stage 0.204
SRR8316907Gold flowering stage 0.506
SRR8316908Gold flowering stage 0.491
SRP132670SRR6706286Control4.437
SRR6706287Light intensity 50%4.472
SRR6706288Light intensity 20%3.947
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.341
CNS0095593Slightly white alabastrum(diploid) 26.217
CNS0095594Slightly white alabastrum(diploid) 33.717
CNS0095595Whole white alabastrum(diploid) 25.350
CNS0095596Whole white alabastrum(diploid) 34.691
CNS0095597Whole white alabastrum(diploid) 43.673
CNS0095598Silvery flower (diploied) 14.362
CNS0095599Silvery flower (diploied) 24.973
CNS0095600Silvery flower (diploied) 32.594
CNS0095601Golden flower (diploid) 14.757
CNS0095602Golden flower (diploid) 23.484
CNS0095603Golden flower (diploid) 33.531
CNS0095604Slightly white alabastrum(tetraploid) 14.773
CNS0095605Slightly white alabastrum(tetraploid) 23.935
CNS0095606Slightly white alabastrum(tetraploid) 39.831
CNS0095607Whole white alabastrum(tetraploid) 12.270
CNS0095608Whole white alabastrum(tetraploid) 20.980
CNS0095609Whole white alabastrum(tetraploid) 33.875
CNS0095610Silvery flower (tetraploid) 11.112
CNS0095611Silvery flower (tetraploid) 23.070
CNS0095612Silvery flower (tetraploid) 31.687
CNS0095613Golden flower (tetraploid) 10.039
CNS0095614Golden flower (tetraploid) 21.140
CNS0095615Golden flower (tetraploid) 30.403
CRA001975CRR073297Stem 12.565
CRR073298Stem 22.148
CRR073299Stem 33.394
CRR073300Leaf 15.009
CRR073301Leaf 24.188
CRR073302Leaf 32.990
CRR073303Juvenile bud 13.042
CRR073304Juvenile bud 20.992
CRR073305Juvenile bud 33.534
CRR073306Third green 10.224
CRR073307Third green 20.870
CRR073308Third green 30.895
CRR073309Second white 10.031
CRR073310Second white 20.373
CRR073311Second white 30.296
CRR073312Silver flowering 10.133
CRR073313Silver flowering 20.046
CRR073314Silver flowering 30.010
CRR073315Gold flowering 12.637
CRR073316Gold flowering 22.140
CRR073317Gold flowering 31.065
CRR073318Tawny withering 18.387
CRR073319Tawny withering 26.557
CRR073320Tawny withering 310.435