Gene detail

Detail information of GWHGAAZE015430

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281575.1	2.6921E-129	PREDICTED: glutathione S-transferase L3-like [Vitis vinifera]
Swissprot	tr\|Q8H8U5\|IN21B_ORYSJ	6E-109	Protein IN2-1 homolog B
trEMBL	tr\|D7T492\|D7T492_VITVI	4E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25324.3}
TAIR10	AT3G55040.1	1E-87	glutathione transferase lambda 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	39394570	39396707	+
GWHAAZE00000004	mRNA	39394570	39396707	+
GWHAAZE00000004	exon	39394570	39394580	+
GWHAAZE00000004	exon	39394767	39394841	+
GWHAAZE00000004	exon	39395012	39395072	+
GWHAAZE00000004	exon	39395189	39395275	+
GWHAAZE00000004	exon	39395597	39395695	+
GWHAAZE00000004	exon	39395772	39395874	+
GWHAAZE00000004	exon	39395975	39396051	+
GWHAAZE00000004	exon	39396210	39396317	+
GWHAAZE00000004	exon	39396648	39396707	+
GWHAAZE00000004	CDS	39394570	39394580	+
GWHAAZE00000004	CDS	39394767	39394841	+
GWHAAZE00000004	CDS	39395012	39395072	+
GWHAAZE00000004	CDS	39395189	39395275	+
GWHAAZE00000004	CDS	39395597	39395695	+
GWHAAZE00000004	CDS	39395772	39395874	+
GWHAAZE00000004	CDS	39395975	39396051	+
GWHAAZE00000004	CDS	39396210	39396317	+
GWHAAZE00000004	CDS	39396648	39396707	+

Transcript Sequence
>GWHTAAZE015446 ATGGCCACTGGAAACGTGCACGAGGCTCTCCCACCTGTTCTTGATTCTACCTCTGAACCTCCTGCAATTTTCGATGGAACAACAAGGCTCTACATATCCTACAGATGCCCTTATGCGCAACGAGTCTGGATTGCGCGTAATTATAAGGGATTGCAGGACAAGATCAAGTTGGTTCCTATTGACCTACAAAACAGACCAGATTGGTACAAGGAGAAAGTTTACCCACCAAACAAGGTGCCATCTTTGGAACACAACAATGAGATTAAAGGAGAGAGTCTTGATTTGCTCAAATACATAGATAGTAACTTTGAAGGACCTTCCCTGACTCCTGATGATCCTGCCAAGAAAGAGTTTGCAGAAGAGTTGCTGTCATATACCGAGTCATTCAAAAAAGCTGTGACCTCTTCCTTCAAGGCAGAGGAGATCAATGAAGCTGCTGAAGCCTTCGACTACCTTGAGAAGGCTCTTTCCAAATTTGATGACGGGCCGTTTTTCCTTGGTCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATCGAAAGATTTCAGCCCTTTTTACTGGAAGTGAAGAAATATGACATTGCGGCAGGCAGGCCAAAACTAGGAAGATGGATTGAGGAGATAAACAAAAATGAGGCTTATGCACCGACCCGAAGGGATCCAAAGGAGCTTGTTTAA

Network for GWHGAAZE015430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.7	GST_N_3	30	106	1.70E-20
PF13410.7	GST_C_2	143	207	2.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.033
	SRR3591706	second leaf	17.586
	SRR3591707	mature leaf	24.155
	SRR3591708	Shoot apex	35.890
	SRR3591709	Stem	60.247
	SRR3591710	White floral bud	21.079
	SRR3591711	White flower	23.842
	SRR3591712	Green floral bud	20.530
	SRR3591713	Yellow flower	22.723
SRP173429	SRR8316895	Juvenile bud stage	14.242
	SRR8316896	Juvenile bud stage	24.583
	SRR8316897	Juvenile bud stage	26.456
	SRR8316894	Third green stage	12.730
	SRR8316900	Third green stage	40.302
	SRR8316901	Third green stage	38.939
	SRR8316898	Complete white stage	16.897
	SRR8316899	Complete white stage	58.767
	SRR8316903	Complete white stage	27.153
	SRR8316902	Silver flowering stage	16.308
	SRR8316904	Silver flowering stage	19.347
	SRR8316905	Silver flowering stage	12.671
	SRR8316906	Gold flowering stage	36.995
	SRR8316907	Gold flowering stage	34.399
	SRR8316908	Gold flowering stage	44.944
SRP132670	SRR6706286	Control	44.426
	SRR6706287	Light intensity 50%	45.843
	SRR6706288	Light intensity 20%	56.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.838
	CNS0095593	Slightly white alabastrum(diploid) 2	26.324
	CNS0095594	Slightly white alabastrum(diploid) 3	26.019
	CNS0095595	Whole white alabastrum(diploid) 2	31.204
	CNS0095596	Whole white alabastrum(diploid) 3	28.356
	CNS0095597	Whole white alabastrum(diploid) 4	33.936
	CNS0095598	Silvery flower (diploied) 1	33.091
	CNS0095599	Silvery flower (diploied) 2	33.988
	CNS0095600	Silvery flower (diploied) 3	44.087
	CNS0095601	Golden flower (diploid) 1	39.173
	CNS0095602	Golden flower (diploid) 2	42.097
	CNS0095603	Golden flower (diploid) 3	41.844
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.595
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.126
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.063
	CNS0095610	Silvery flower (tetraploid) 1	47.092
	CNS0095611	Silvery flower (tetraploid) 2	58.845
	CNS0095612	Silvery flower (tetraploid) 3	53.510
	CNS0095613	Golden flower (tetraploid) 1	31.219
	CNS0095614	Golden flower (tetraploid) 2	34.932
	CNS0095615	Golden flower (tetraploid) 3	16.432
CRA001975	CRR073297	Stem 1	40.712
	CRR073298	Stem 2	36.992
	CRR073299	Stem 3	36.455
	CRR073300	Leaf 1	51.719
	CRR073301	Leaf 2	48.809
	CRR073302	Leaf 3	62.082
	CRR073303	Juvenile bud 1	66.936
	CRR073304	Juvenile bud 2	60.296
	CRR073305	Juvenile bud 3	60.690
	CRR073306	Third green 1	34.192
	CRR073307	Third green 2	34.678
	CRR073308	Third green 3	29.335
	CRR073309	Second white 1	57.168
	CRR073310	Second white 2	45.868
	CRR073311	Second white 3	36.787
	CRR073312	Silver flowering 1	35.148
	CRR073313	Silver flowering 2	27.609
	CRR073314	Silver flowering 3	22.431
	CRR073315	Gold flowering 1	56.125
	CRR073316	Gold flowering 2	60.994
	CRR073317	Gold flowering 3	48.705
	CRR073318	Tawny withering 1	55.200
	CRR073319	Tawny withering 2	42.205
	CRR073320	Tawny withering 3	31.643