Gene detail

Detail information of GWHGAAZE015481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095367.1	2.22004E-15	PREDICTED: endoglucanase 9-like [Sesamum indicum]
Swissprot	tr\|Q2V4L8\|GUN3_ARATH	2E-16	Endoglucanase 3 (Precursor)
trEMBL	tr\|W9S9Q9\|W9S9Q9_9ROSA	4E-15	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G22880.1	3E-15	cellulase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	42793298	42794762	-
GWHAAZE00000004	mRNA	42793298	42794762	-
GWHAAZE00000004	exon	42793298	42793410	-
GWHAAZE00000004	exon	42793498	42793612	-
GWHAAZE00000004	exon	42793986	42794615	-
GWHAAZE00000004	exon	42794733	42794762	-
GWHAAZE00000004	CDS	42794733	42794762	-
GWHAAZE00000004	CDS	42793986	42794615	-
GWHAAZE00000004	CDS	42793498	42793612	-
GWHAAZE00000004	CDS	42793298	42793410	-

Transcript Sequence
>GWHTAAZE015497 ATGAGTACCTTGTGGCACCATAGGATTCAGCAAAGACAGTTGGATGAGTTACATGAGTTAGATATTGTGCTTCCAGGAGGAGATATTCCAGAGTGGTTCGGCAAGCCGACTACGGGGCATTCAATTTCGTTGAAGCTTCCTTCAAGTTGTTTTCGTAATTTCAAGGGATGTGGGCTGTGTGTAGCATTTGACCCAAGATTCAAAGCCAGACCATTTACATTTTTTGGCACACGAAAAAAGGTCTTGGGTGTTCTGGAAATCACAGTCAAAATCTGTAATAATCATCTTCCACATCCATATCTTCCACTTCCATTTACAAAGCTTTTTAGAAGGAAAGTGAAAAATATTAGCATGGAGCACGTGTATCTATACTACATATCTTTTATTTCCCGTGCGTGGCGTCTTGTCCAACTGAATGATTGCTGTGAAGTGGAGGTTTCTTTTAAAAACTCAATCCCAAACATTGTTGGGGTTACGCAATGGGGAATGGTTCTAGTACCCAAGTCCCGAGGGCTATATATGGAACAATATGATGATGATGATGGTGATGACCAGTGGCGTAGCCAAGATTTCTCCATGGGGCGGGCTAGGCTAAAAAGAACTATTCGCCCCCAGAATTGGAGGTCCAATTCTGGCTTTTTGGATGGCTCTGAAGCCGAAGACATGGCAAAAACGGGCCCCAAGTTAGCAAACGCTAGGGCTGCGATCAAGTGGGCTACGGATTACTTACTAAAATGTGCCAGGGCCAAGCCCGGTAAGCTCTACGTTGGGGTAGGGGAAATGGCCGCTGCATTCGCTGCTTCTTTGGTTTTTCAAAAAGTTGACCCGACATACTCAAAATTGCTGTTGAGGACAGCAAAGAGTGTTTCAGTTTGCAATTTAGTGTAG

Network for GWHGAAZE015481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.743
	SRR3591706	second leaf	0.392
	SRR3591707	mature leaf	1.402
	SRR3591708	Shoot apex	0.851
	SRR3591709	Stem	1.491
	SRR3591710	White floral bud	1.141
	SRR3591711	White flower	1.003
	SRR3591712	Green floral bud	0.564
	SRR3591713	Yellow flower	0.612
SRP173429	SRR8316895	Juvenile bud stage	16.227
	SRR8316896	Juvenile bud stage	20.920
	SRR8316897	Juvenile bud stage	11.241
	SRR8316894	Third green stage	3.218
	SRR8316900	Third green stage	8.305
	SRR8316901	Third green stage	12.973
	SRR8316898	Complete white stage	3.471
	SRR8316899	Complete white stage	23.537
	SRR8316903	Complete white stage	6.983
	SRR8316902	Silver flowering stage	6.377
	SRR8316904	Silver flowering stage	7.482
	SRR8316905	Silver flowering stage	2.883
	SRR8316906	Gold flowering stage	11.096
	SRR8316907	Gold flowering stage	8.526
	SRR8316908	Gold flowering stage	9.807
SRP132670	SRR6706286	Control	11.104
	SRR6706287	Light intensity 50%	11.980
	SRR6706288	Light intensity 20%	10.982
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.558
	CNS0095593	Slightly white alabastrum(diploid) 2	19.037
	CNS0095594	Slightly white alabastrum(diploid) 3	16.138
	CNS0095595	Whole white alabastrum(diploid) 2	14.230
	CNS0095596	Whole white alabastrum(diploid) 3	6.074
	CNS0095597	Whole white alabastrum(diploid) 4	11.650
	CNS0095598	Silvery flower (diploied) 1	32.470
	CNS0095599	Silvery flower (diploied) 2	31.143
	CNS0095600	Silvery flower (diploied) 3	25.929
	CNS0095601	Golden flower (diploid) 1	38.362
	CNS0095602	Golden flower (diploid) 2	30.358
	CNS0095603	Golden flower (diploid) 3	27.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.780
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.431
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.272
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.570
	CNS0095610	Silvery flower (tetraploid) 1	12.525
	CNS0095611	Silvery flower (tetraploid) 2	9.565
	CNS0095612	Silvery flower (tetraploid) 3	3.676
	CNS0095613	Golden flower (tetraploid) 1	9.700
	CNS0095614	Golden flower (tetraploid) 2	12.421
	CNS0095615	Golden flower (tetraploid) 3	8.823
CRA001975	CRR073297	Stem 1	8.959
	CRR073298	Stem 2	9.165
	CRR073299	Stem 3	4.477
	CRR073300	Leaf 1	9.421
	CRR073301	Leaf 2	11.550
	CRR073302	Leaf 3	4.542
	CRR073303	Juvenile bud 1	7.876
	CRR073304	Juvenile bud 2	6.781
	CRR073305	Juvenile bud 3	7.106
	CRR073306	Third green 1	4.380
	CRR073307	Third green 2	3.687
	CRR073308	Third green 3	5.115
	CRR073309	Second white 1	3.855
	CRR073310	Second white 2	3.377
	CRR073311	Second white 3	2.880
	CRR073312	Silver flowering 1	3.289
	CRR073313	Silver flowering 2	4.610
	CRR073314	Silver flowering 3	2.285
	CRR073315	Gold flowering 1	12.556
	CRR073316	Gold flowering 2	13.085
	CRR073317	Gold flowering 3	6.651
	CRR073318	Tawny withering 1	12.783
	CRR073319	Tawny withering 2	27.477
	CRR073320	Tawny withering 3	16.465