Detail information of GWHGAAZE015495


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002280793.10PREDICTED: protein tesmin/TSO1-like CXC 5 [Vitis vinifera]
Swissprottr|Q9SZD1|TCX5_ARATH1E-153Protein tesmin/TSO1-like CXC 5
trEMBLtr|D7TBL3|D7TBL3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI28048.3}
TAIR10AT4G29000.12E-112Tesmin/TSO1-like CXC domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene4351086543521828-
GWHAAZE00000004mRNA4351086543521828-
GWHAAZE00000004exon4351086543511108-
GWHAAZE00000004exon4351261143512974-
GWHAAZE00000004exon4351467743514771-
GWHAAZE00000004exon4351484843514942-
GWHAAZE00000004exon4351625743516601-
GWHAAZE00000004exon4351896743519144-
GWHAAZE00000004exon4352137443521481-
GWHAAZE00000004exon4352169043521708-
GWHAAZE00000004exon4352182543521828-
GWHAAZE00000004CDS4352182543521828-
GWHAAZE00000004CDS4352169043521708-
GWHAAZE00000004CDS4352137443521481-
GWHAAZE00000004CDS4351896743519144-
GWHAAZE00000004CDS4351625743516601-
GWHAAZE00000004CDS4351484843514942-
GWHAAZE00000004CDS4351467743514771-
GWHAAZE00000004CDS4351261143512974-
GWHAAZE00000004CDS4351086543511108-
Transcript Sequence

Network for GWHGAAZE015495

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03638.16TCR31661.00E-11
PF03638.16TCR1111451.70E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyCPP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.079
SRR3591706second leaf3.196
SRR3591707mature leaf3.775
SRR3591708Shoot apex4.084
SRR3591709Stem1.613
SRR3591710White floral bud2.083
SRR3591711White flower2.383
SRR3591712Green floral bud1.657
SRR3591713Yellow flower1.246
SRP173429 SRR8316895Juvenile bud stage 2.207
SRR8316896Juvenile bud stage 2.232
SRR8316897Juvenile bud stage 0.528
SRR8316894Third green stage 0.964
SRR8316900Third green stage 1.598
SRR8316901Third green stage 1.376
SRR8316898Complete white stage 0.644
SRR8316899Complete white stage 2.791
SRR8316903Complete white stage 0.625
SRR8316902Silver flowering stage1.101
SRR8316904Silver flowering stage1.387
SRR8316905Silver flowering stage0.643
SRR8316906Gold flowering stage 1.718
SRR8316907Gold flowering stage 1.967
SRR8316908Gold flowering stage 1.433
SRP132670SRR6706286Control2.404
SRR6706287Light intensity 50%1.945
SRR6706288Light intensity 20%1.838
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.722
CNS0095593Slightly white alabastrum(diploid) 20.893
CNS0095594Slightly white alabastrum(diploid) 31.443
CNS0095595Whole white alabastrum(diploid) 21.366
CNS0095596Whole white alabastrum(diploid) 30.700
CNS0095597Whole white alabastrum(diploid) 40.618
CNS0095598Silvery flower (diploied) 13.043
CNS0095599Silvery flower (diploied) 22.682
CNS0095600Silvery flower (diploied) 33.495
CNS0095601Golden flower (diploid) 13.240
CNS0095602Golden flower (diploid) 22.372
CNS0095603Golden flower (diploid) 33.777
CNS0095604Slightly white alabastrum(tetraploid) 11.534
CNS0095605Slightly white alabastrum(tetraploid) 21.352
CNS0095606Slightly white alabastrum(tetraploid) 32.027
CNS0095607Whole white alabastrum(tetraploid) 10.948
CNS0095608Whole white alabastrum(tetraploid) 21.149
CNS0095609Whole white alabastrum(tetraploid) 32.021
CNS0095610Silvery flower (tetraploid) 14.031
CNS0095611Silvery flower (tetraploid) 22.831
CNS0095612Silvery flower (tetraploid) 34.747
CNS0095613Golden flower (tetraploid) 12.526
CNS0095614Golden flower (tetraploid) 22.040
CNS0095615Golden flower (tetraploid) 31.754
CRA001975CRR073297Stem 13.660
CRR073298Stem 22.854
CRR073299Stem 34.106
CRR073300Leaf 12.907
CRR073301Leaf 23.039
CRR073302Leaf 32.493
CRR073303Juvenile bud 11.912
CRR073304Juvenile bud 20.615
CRR073305Juvenile bud 32.799
CRR073306Third green 11.356
CRR073307Third green 21.422
CRR073308Third green 31.081
CRR073309Second white 11.303
CRR073310Second white 22.053
CRR073311Second white 31.962
CRR073312Silver flowering 11.917
CRR073313Silver flowering 20.900
CRR073314Silver flowering 31.562
CRR073315Gold flowering 11.953
CRR073316Gold flowering 21.487
CRR073317Gold flowering 31.368
CRR073318Tawny withering 12.983
CRR073319Tawny withering 21.481
CRR073320Tawny withering 32.584