Gene detail

Detail information of GWHGAAZE015499

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO66446.1	4.7837E-154	hypothetical protein CISIN_1g001349mg [Citrus sinensis]
Swissprot	tr\|D1FP57\|LIN2_LOTJA	2E-64	Putative E3 ubiquitin-protein ligase LIN-2 {ECO:0000303\|PubMed:19776163}
trEMBL	tr\|A0A067FTB8\|A0A067FTB8_CITSI	2E-154	Uncharacterized protein {ECO:0000313\|EMBL:KDO66446.1}
TAIR10	AT1G23030.1	3E-16	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	43585250	43586532	-
GWHAAZE00000004	mRNA	43585250	43586532	-
GWHAAZE00000004	exon	43585250	43585831	-
GWHAAZE00000004	exon	43585906	43586380	-
GWHAAZE00000004	exon	43586462	43586532	-
GWHAAZE00000004	CDS	43586462	43586532	-
GWHAAZE00000004	CDS	43585906	43586380	-
GWHAAZE00000004	CDS	43585250	43585831	-

Transcript Sequence
>GWHTAAZE015515 ATGGCATTGTTTGACTCTAGACAGAGTGAATCCCGAAAGCAAAAGCAACCCATTTCTGCAGAATCAAATTGTTTTCAAGATCCTCCTCACATGGCAGACATAGATACCCCACCTAGCGGCGGAAAGTACACCCCGCCTAAGGACTTTGTATGTCCCATAACAAGTAACATATTTGATGATCCAGTGACTTTAGAGACGGGTCAGACTTATGAGCGTAAGGCTATTCAAGAATGGATCGATAGAGGAAACTCCACATGCCCCATTACACGGCAGAATCTGCAGGGCACTCAGCTACCTAAGACCAATTACGTGCTTAAACGGTTGATTACCAGCTGGTGGATACAGAACCCTGGTTTAGTTCTAAGTTCCCCTGTTCTCAAGTTGGCAATGCGTTCGAGTTCCCCTAACAGTGTGGTCATATGCCAAGGCACTACTACTGATGGCACACTTACTGAGCTTCGAAATGCAATTTCGAGCATTTGTACGTCGGAAATCTTGGAGGAATCTGAAATGGCAGTGCTTAGAGTAGAGCAGTTTTGGGAGGAAATTCTCTTCCATTTGGTCGATACCCGAGTTTTGAGGGCCACTTTTTTCTTCCTTTCTGAGCTCGGGTTGAGAGACAATGGTGTGATCAAGACACTAACGAGGGTTTATTCTGACGTGGAATGTGTAGTTTCCATCTTTAAAAAGGGGTTGGTTGATGCTCTTGTATTGTTCTACATGTTAAGACCTTTAACCACCACCCTTTTGGATATGGATGTGGTGGATTTGCTCTTAACTATCATTAGACGGAATGAGGATGATTCGATTAAGATGTGTATGAAGCCAAAAACGGCTTCGGTGCTTTTGCTGGGGCAGATTCTGAAAAGTGAAGATAAAAGCACTGTTTCTGAAATTACTAAGGAGGTATTTTCAGCAAAAGTGATTGAAAATATTGTCCGAAGCATAGAAGCTGAGATAGCCGAGGAGAGGATTGCTTCCATTGGCATATTACTTAGATGCATGGAGGAGGATGGTAAGTTCAGGAACATCATTGCTGACAAGGCTGAATTATCTTCGGTTTTGGAGAGCTTCGTTGCATTGAATGATGCAGATCGGTTTGAGATAGTTTGTTTTCTTTTGGGATAA

Network for GWHGAAZE015499

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	46	116	2.80E-15

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.756
	SRR3591706	second leaf	5.826
	SRR3591707	mature leaf	8.562
	SRR3591708	Shoot apex	11.872
	SRR3591709	Stem	9.238
	SRR3591710	White floral bud	8.803
	SRR3591711	White flower	8.217
	SRR3591712	Green floral bud	4.897
	SRR3591713	Yellow flower	2.530
SRP173429	SRR8316895	Juvenile bud stage	21.131
	SRR8316896	Juvenile bud stage	54.887
	SRR8316897	Juvenile bud stage	0.392
	SRR8316894	Third green stage	16.589
	SRR8316900	Third green stage	26.766
	SRR8316901	Third green stage	28.456
	SRR8316898	Complete white stage	3.379
	SRR8316899	Complete white stage	9.840
	SRR8316903	Complete white stage	14.166
	SRR8316902	Silver flowering stage	3.067
	SRR8316904	Silver flowering stage	5.316
	SRR8316905	Silver flowering stage	1.563
	SRR8316906	Gold flowering stage	4.009
	SRR8316907	Gold flowering stage	6.422
	SRR8316908	Gold flowering stage	1.455
SRP132670	SRR6706286	Control	15.188
	SRR6706287	Light intensity 50%	16.595
	SRR6706288	Light intensity 20%	19.593
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.958
	CNS0095593	Slightly white alabastrum(diploid) 2	21.285
	CNS0095594	Slightly white alabastrum(diploid) 3	42.997
	CNS0095595	Whole white alabastrum(diploid) 2	15.110
	CNS0095596	Whole white alabastrum(diploid) 3	14.523
	CNS0095597	Whole white alabastrum(diploid) 4	18.442
	CNS0095598	Silvery flower (diploied) 1	15.296
	CNS0095599	Silvery flower (diploied) 2	11.312
	CNS0095600	Silvery flower (diploied) 3	10.277
	CNS0095601	Golden flower (diploid) 1	14.479
	CNS0095602	Golden flower (diploid) 2	9.316
	CNS0095603	Golden flower (diploid) 3	8.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.040
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.014
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.007
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.027
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.011
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	32.679
	CRR073298	Stem 2	27.500
	CRR073299	Stem 3	3.429
	CRR073300	Leaf 1	14.424
	CRR073301	Leaf 2	17.604
	CRR073302	Leaf 3	2.084
	CRR073303	Juvenile bud 1	2.373
	CRR073304	Juvenile bud 2	0.890
	CRR073305	Juvenile bud 3	3.200
	CRR073306	Third green 1	0.762
	CRR073307	Third green 2	0.579
	CRR073308	Third green 3	0.819
	CRR073309	Second white 1	0.196
	CRR073310	Second white 2	0.416
	CRR073311	Second white 3	0.958
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.466
	CRR073316	Gold flowering 2	1.335
	CRR073317	Gold flowering 3	0.576
	CRR073318	Tawny withering 1	1.088
	CRR073319	Tawny withering 2	2.464
	CRR073320	Tawny withering 3	1.087