Gene detail

Detail information of GWHGAAZE015522

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280793.1	6.8082E-159	PREDICTED: protein tesmin/TSO1-like CXC 5 [Vitis vinifera]
Swissprot	tr\|Q9SZD1\|TCX5_ARATH	7E-121	Protein tesmin/TSO1-like CXC 5
trEMBL	tr\|D7TBL3\|D7TBL3_VITVI	5E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28048.3}
TAIR10	AT4G29000.1	3E-85	Tesmin/TSO1-like CXC domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	45607115	45619194	+
GWHAAZE00000004	mRNA	45607115	45619194	+
GWHAAZE00000004	exon	45607115	45607308	+
GWHAAZE00000004	exon	45610216	45610323	+
GWHAAZE00000004	exon	45612553	45612730	+
GWHAAZE00000004	exon	45615189	45615533	+
GWHAAZE00000004	exon	45616991	45617081	+
GWHAAZE00000004	exon	45618796	45619194	+
GWHAAZE00000004	CDS	45607115	45607308	+
GWHAAZE00000004	CDS	45610216	45610323	+
GWHAAZE00000004	CDS	45612553	45612730	+
GWHAAZE00000004	CDS	45615189	45615533	+
GWHAAZE00000004	CDS	45616991	45617081	+
GWHAAZE00000004	CDS	45618796	45619118	+
GWHAAZE00000004	three_prime_UTR	45619119	45619194	+

Transcript Sequence
>GWHTAAZE015538 ATGGCTGCTCAGGCGGAGGAGGTGGTAGTGTCGGATGTTCCGGCGAAGAAGCAGCTCGCAAGGCAGCTTGATTTTGGAGGGGCCCAGGCGAATGTGATGGTGCACCCTCAGCCGCTGCAAACTCAGGTGAATGTGCAGTTGCAGTTGCAGCCGCCGGTGCAAGCTCAGGCGCCTCCTCCTTTGATACGGCCTGTGAAACTGGAATCCCCGAGAGGAAGACCTAGACAAAATGTTGAAGTAAAAGATGGTACCCCAAAGAAGCAAAAACAGTGCAACTGCAAACATTCACGATGCTTGAAGTTGTATTGTGAGTGCTTTGCAACTGGAGTATACTGTGATGGGTGTAATTGTGTAAATTGTCATAATACTGTTGCAAATGAGGCTGCCAGACGAGAAGCTGTTGAGGCTATCTTGGAGCGTAATCCAAATGCATTTAGGCCAAAAATTGCTAGCAGTCCACATGGAGCTCGAGATAGAAAGGTAGAGGTGGGAAAGCATAATAAGGGATGCCATTGCAAGAAATCAGGGTGCTTGAAAAAGTATTGTGAGTGCTTTCAGGCCAACATTCTTTGTTCTGAAAATTGTAAGTGCGTTGACTGCAAGAATTTCGAAGGAAGTGAAGAGAAGCAAGCTCTTTTACGTGGATATCAAGCCAACAATATAGCGCATATCCAGCAAGCGGCAAATGCTGCAATCACAGGCGCTATTGGATCCTCTGGTTTTGGAGCTCCACTAGCGTCTAAGAAGAGAAAAGGTCCTGAGATCTTATTTGGATTGACTGCAACAAAAGACCTCTCAATTCACAGGCTTTCACCGTCCCCACAGGTCTCTCTTAGCAGACATCATCCAAACACAGGACTTGAAGGAGCTTTGTTCGGTTTTGGTGGTATGTTCAGGAGAAGCTGCGAAGATGTTTATGAGAAAAATCGACCCGATACTGCCGCAAAAGATGTTAAAGAATGCTCCCTTGCTTCGTCAACTCAAAACCGGTTACAACCCCAAGTTGAGAAAGTTGTAGCCAATGATTGTTCATTGCGTGGGACCCGGGATGGGAGAAATGGCTGTGATGAGACCAGTTTGGATGGTGCTGATGTATCGAAAGGAAGGCCAGTGTCCCCTAGAACTCTAGCATTGATGTGTGATGAACGCGATACTATCTTTACAGGTGCAGTTTCACCCACAGGATTAATGGGCCATGGCCTTAGCACCTCATCTCAGTCGCCAAATGGCGAAAAGTGACTGAAGCATATGCGGAGCAAGAGAGAATTATTCTGACACAGTTCCAAGACTGTCTTAACCGGCTCATCAATTTGGG

Network for GWHGAAZE015522

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03638.16	TCR	88	123	8.20E-12
PF03638.16	TCR	168	202	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.463
	SRR3591706	second leaf	2.363
	SRR3591707	mature leaf	3.457
	SRR3591708	Shoot apex	5.404
	SRR3591709	Stem	1.883
	SRR3591710	White floral bud	1.568
	SRR3591711	White flower	3.850
	SRR3591712	Green floral bud	1.496
	SRR3591713	Yellow flower	2.603
SRP173429	SRR8316895	Juvenile bud stage	1.245
	SRR8316896	Juvenile bud stage	1.147
	SRR8316897	Juvenile bud stage	0.650
	SRR8316894	Third green stage	0.489
	SRR8316900	Third green stage	1.537
	SRR8316901	Third green stage	1.224
	SRR8316898	Complete white stage	0.594
	SRR8316899	Complete white stage	1.876
	SRR8316903	Complete white stage	0.715
	SRR8316902	Silver flowering stage	0.535
	SRR8316904	Silver flowering stage	1.498
	SRR8316905	Silver flowering stage	0.385
	SRR8316906	Gold flowering stage	0.776
	SRR8316907	Gold flowering stage	1.201
	SRR8316908	Gold flowering stage	1.335
SRP132670	SRR6706286	Control	1.172
	SRR6706287	Light intensity 50%	1.219
	SRR6706288	Light intensity 20%	1.429
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.404
	CNS0095593	Slightly white alabastrum(diploid) 2	0.434
	CNS0095594	Slightly white alabastrum(diploid) 3	0.882
	CNS0095595	Whole white alabastrum(diploid) 2	1.020
	CNS0095596	Whole white alabastrum(diploid) 3	0.409
	CNS0095597	Whole white alabastrum(diploid) 4	0.483
	CNS0095598	Silvery flower (diploied) 1	2.933
	CNS0095599	Silvery flower (diploied) 2	1.263
	CNS0095600	Silvery flower (diploied) 3	1.665
	CNS0095601	Golden flower (diploid) 1	1.227
	CNS0095602	Golden flower (diploid) 2	1.508
	CNS0095603	Golden flower (diploid) 3	1.961
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.309
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.512
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.227
	CNS0095610	Silvery flower (tetraploid) 1	3.327
	CNS0095611	Silvery flower (tetraploid) 2	3.175
	CNS0095612	Silvery flower (tetraploid) 3	4.920
	CNS0095613	Golden flower (tetraploid) 1	1.921
	CNS0095614	Golden flower (tetraploid) 2	2.252
	CNS0095615	Golden flower (tetraploid) 3	1.394
CRA001975	CRR073297	Stem 1	1.760
	CRR073298	Stem 2	1.990
	CRR073299	Stem 3	1.182
	CRR073300	Leaf 1	1.788
	CRR073301	Leaf 2	1.307
	CRR073302	Leaf 3	1.821
	CRR073303	Juvenile bud 1	0.852
	CRR073304	Juvenile bud 2	0.201
	CRR073305	Juvenile bud 3	0.743
	CRR073306	Third green 1	0.742
	CRR073307	Third green 2	0.349
	CRR073308	Third green 3	0.320
	CRR073309	Second white 1	0.346
	CRR073310	Second white 2	1.661
	CRR073311	Second white 3	0.260
	CRR073312	Silver flowering 1	0.482
	CRR073313	Silver flowering 2	0.627
	CRR073314	Silver flowering 3	0.603
	CRR073315	Gold flowering 1	1.117
	CRR073316	Gold flowering 2	1.644
	CRR073317	Gold flowering 3	0.814
	CRR073318	Tawny withering 1	0.912
	CRR073319	Tawny withering 2	0.527
	CRR073320	Tawny withering 3	0.509