Gene detail

Detail information of GWHGAAZE015527

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478216.1	0	PREDICTED: 12-oxophytodienoate reductase 2-like isoform X2 [Citrus sinensis]
Swissprot	tr\|Q8GYB8\|OPR2_ARATH	0	12-oxophytodienoate reductase 2
trEMBL	tr\|M5XGD8\|M5XGD8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24531.1}
TAIR10	AT1G76690.1	8E-169	12-oxophytodienoate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	45789523	45793364	+
GWHAAZE00000004	mRNA	45789523	45793364	+
GWHAAZE00000004	exon	45789523	45789662	+
GWHAAZE00000004	exon	45790037	45790167	+
GWHAAZE00000004	exon	45791658	45791831	+
GWHAAZE00000004	exon	45792769	45793364	+
GWHAAZE00000004	CDS	45789523	45789662	+
GWHAAZE00000004	CDS	45790037	45790167	+
GWHAAZE00000004	CDS	45791658	45791831	+
GWHAAZE00000004	CDS	45792769	45793364	+

Transcript Sequence
>GWHTAAZE015543 ATTGTTTTGGCACCGCTAACGAGGCAGAGATCATACAACAATGTCCCTCAGCCACATGCTATCTTGTATTACTCCCAAAGAACCACTAAAGGGGGACTTCTCATAGCAGAAGCCACCGGAATTTCAGATACTTCCCGAGGGTATCCAGATGTACCTGGGATATGGACAATGGAACAAGTTGAAGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGGCATCTTCTTTTGCCAAATTTGGCATACAGGGAGGGTTTCAAATCGGGGATTTCAGCCAAATGGACAGGATCCAATTTCGTCTACAGACAAGCCATTAACTCAAATACAAAGCAATGGCATAGATGTTGCAGAGTTTACACCTCCACGACTGCTAGCTACAGATGAAATTCCTGAAATTGTCCAGCATTTTAGACTTGCCGCAAGAAATGCAATGGAAGCTGGTTTTGACGGGGTTGAGATCCATGGAGCTCATGGTTACCTAATAGACCAGTTTATGAAGGACCAAGTCAACGATCGAACAGACGAGTATGGAGGCTCGCTAGAGAACCGTTGCAGGTTCGCTTTAGAGATAGTCGAGGCCATTTCTAACGAAATAGGACCCGACAAAGTCGGCATAAGGCTTTCACCCTTCGCGAATTACATGGAGTCTGGTGATTCGGATCCAGAAGCTCTCGGTCTTTATATGTCCGAGTCACTGAATAAGTACAACATTCTCTACTGTCACATGGTTGAGCCGAGGATGAAAACTGTAGGTGAGAAAAGCGAAAGTGCCCATAGCCTTGTGCCCATGAGGAAAGCTTTTAAAGGTACTTTCATAAGTGCTGGCGGGTTTGATAGGGAAGATGGCAACAAAGCCGTGGCCGAGAAGCGGACAGATCTTGTTGCTTATGGTCGGTTGTTCTTAGCAAACCCGGATTTGCCAAAGAGGTTTGAGCTCAATGCGCCACTCAACAAGTACAACAGGGATACATTCTATGTTCCTGAACCTGTTATTGGCTACACTGATTATCCATTTCTTGAAACAGCAACTGATTAA

Network for GWHGAAZE015527

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0089

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	1	318	3.70E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.169
	SRR3591706	second leaf	4.039
	SRR3591707	mature leaf	3.572
	SRR3591708	Shoot apex	3.971
	SRR3591709	Stem	17.207
	SRR3591710	White floral bud	13.847
	SRR3591711	White flower	24.853
	SRR3591712	Green floral bud	20.280
	SRR3591713	Yellow flower	37.839
SRP173429	SRR8316895	Juvenile bud stage	4.416
	SRR8316896	Juvenile bud stage	9.842
	SRR8316897	Juvenile bud stage	4.139
	SRR8316894	Third green stage	4.025
	SRR8316900	Third green stage	12.337
	SRR8316901	Third green stage	16.705
	SRR8316898	Complete white stage	6.146
	SRR8316899	Complete white stage	18.348
	SRR8316903	Complete white stage	7.591
	SRR8316902	Silver flowering stage	7.964
	SRR8316904	Silver flowering stage	16.074
	SRR8316905	Silver flowering stage	12.341
	SRR8316906	Gold flowering stage	33.679
	SRR8316907	Gold flowering stage	21.858
	SRR8316908	Gold flowering stage	48.218
SRP132670	SRR6706286	Control	12.970
	SRR6706287	Light intensity 50%	12.430
	SRR6706288	Light intensity 20%	12.518
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.414
	CNS0095593	Slightly white alabastrum(diploid) 2	52.833
	CNS0095594	Slightly white alabastrum(diploid) 3	33.972
	CNS0095595	Whole white alabastrum(diploid) 2	42.521
	CNS0095596	Whole white alabastrum(diploid) 3	37.027
	CNS0095597	Whole white alabastrum(diploid) 4	53.988
	CNS0095598	Silvery flower (diploied) 1	9.561
	CNS0095599	Silvery flower (diploied) 2	7.740
	CNS0095600	Silvery flower (diploied) 3	21.113
	CNS0095601	Golden flower (diploid) 1	5.239
	CNS0095602	Golden flower (diploid) 2	13.042
	CNS0095603	Golden flower (diploid) 3	12.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.222
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.007
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.142
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.522
	CNS0095610	Silvery flower (tetraploid) 1	79.533
	CNS0095611	Silvery flower (tetraploid) 2	61.630
	CNS0095612	Silvery flower (tetraploid) 3	62.189
	CNS0095613	Golden flower (tetraploid) 1	40.941
	CNS0095614	Golden flower (tetraploid) 2	34.832
	CNS0095615	Golden flower (tetraploid) 3	35.578
CRA001975	CRR073297	Stem 1	13.804
	CRR073298	Stem 2	11.863
	CRR073299	Stem 3	15.059
	CRR073300	Leaf 1	20.726
	CRR073301	Leaf 2	22.686
	CRR073302	Leaf 3	17.555
	CRR073303	Juvenile bud 1	19.956
	CRR073304	Juvenile bud 2	34.539
	CRR073305	Juvenile bud 3	23.482
	CRR073306	Third green 1	4.414
	CRR073307	Third green 2	8.247
	CRR073308	Third green 3	3.006
	CRR073309	Second white 1	25.856
	CRR073310	Second white 2	19.474
	CRR073311	Second white 3	13.762
	CRR073312	Silver flowering 1	8.817
	CRR073313	Silver flowering 2	10.674
	CRR073314	Silver flowering 3	9.080
	CRR073315	Gold flowering 1	6.818
	CRR073316	Gold flowering 2	4.818
	CRR073317	Gold flowering 3	3.013
	CRR073318	Tawny withering 1	17.558
	CRR073319	Tawny withering 2	34.123
	CRR073320	Tawny withering 3	6.466