Gene detail

Detail information of GWHGAAZE015529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478216.1	0	PREDICTED: 12-oxophytodienoate reductase 2-like isoform X2 [Citrus sinensis]
Swissprot	tr\|Q8LAH7\|OPR1_ARATH	0	12-oxophytodienoate reductase 1
trEMBL	tr\|M5XGD8\|M5XGD8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24531.1}
TAIR10	AT1G76680.1	2E-173	12-oxophytodienoate reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	45824501	45829270	+
GWHAAZE00000004	mRNA	45824501	45829270	+
GWHAAZE00000004	exon	45824501	45824589	+
GWHAAZE00000004	exon	45825764	45825904	+
GWHAAZE00000004	exon	45826263	45826393	+
GWHAAZE00000004	exon	45827509	45827685	+
GWHAAZE00000004	exon	45828675	45829270	+
GWHAAZE00000004	CDS	45824501	45824589	+
GWHAAZE00000004	CDS	45825764	45825904	+
GWHAAZE00000004	CDS	45826263	45826393	+
GWHAAZE00000004	CDS	45827509	45827685	+
GWHAAZE00000004	CDS	45828675	45829270	+

Transcript Sequence
>GWHTAAZE015545 ATGGAAATAAATGGAGAAGTTGGAGAGCATACCAATAAAATTCCTCTGCTTACACCTTACCAAATGGGCAATTTCAAACTTTCTCACAGAATTGTTTTGGCACCACTAACGCGGCAGAGATCGTACAACAATGTCCCTCAGCCACATGCTATCTTGTATTACTCTCAAAGAACCACTAAAGGGGGACTTCTCATTGCAGAAGCCACAGGAGTTTCAGATACTGCCCAAGGGTATGCATTTACACCCGGTATATGGACAAAGGAACAAGTTGAAGCATGGAAACCCGTCGTAGATGCTGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAGATTTGGCATGTAGGGAGGGTTTCGAATCGGGTATATCAGCCAAATGGACAGGATCCAATTTCGTGTACAGACAAGCCATTAGCTCCTACACCAAGTTTCGATGGCATAGGTGTTGATGAATTTGCACCTCCACGACGGCTAACTGAAGATGAAATTCCTGAAATTGTCCAGCATTTTAGACTTGCAGCAAGAAATGCTATGGAAGCAGGTTTTGACGGGATTGAGATCCATGGGGCTAATGGTTACCTAGTAGACCAGTTTATGAAGGACCATGTTAATGATCGAACAGACAAGTACGGAGGCTCGCTAGAGAACCGTTGCAGATTCGCTCTAGAGATTGTGGAAGCCATTTCTAATGAGATAGGACCCGACAGAGTCGGCATAAGGCTTTCACCCTTTGCGAATTTCATGGAATCTGGTGATTCAGATCCAGCAGCTCTCGGTCTTTATATGGCCAAGTCATTGAATAAGTACAACATTCTCTACTGCCACGTGATCGAGCCGAGGATGAAAACCGCAGGGGAGAAAAGCGAATCCCCCCATAGCCTTATGCCCATGAGGAAAGCTTTTAACGGTACTTTCATAAGCGCTGGTGGGTTTGGTAGGGAAGATGGTAACAAAGCTGTGGCCGAGAAGCAGACGGATCTTGTGGCTTACGGTCGGTGGTTTTTAGCTAACCCAGATTTGCCAGAGAGGTTCAAGCGTAATGCACCGCTCAACAAATACAACAGGGGAACGTTCTATGTTGCTGAACCTGTTATTGGCTACACTGATTATCCATTTCTTGAAACAGCGACTGATTAA

Network for GWHGAAZE015529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	16	350	1.70E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0003824	molecular_function	catalytic activity
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.015
	SRR3591707	mature leaf	0.037
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.034
	SRR3591710	White floral bud	0.109
	SRR3591711	White flower	0.274
	SRR3591712	Green floral bud	0.605
	SRR3591713	Yellow flower	0.001
SRP173429	SRR8316895	Juvenile bud stage	0.488
	SRR8316896	Juvenile bud stage	0.336
	SRR8316897	Juvenile bud stage	0.405
	SRR8316894	Third green stage	0.144
	SRR8316900	Third green stage	0.522
	SRR8316901	Third green stage	0.487
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	0.525
	SRR8316903	Complete white stage	0.101
	SRR8316902	Silver flowering stage	0.208
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.130
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.011
SRP132670	SRR6706286	Control	0.281
	SRR6706287	Light intensity 50%	0.396
	SRR6706288	Light intensity 20%	0.254
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.510
	CNS0095593	Slightly white alabastrum(diploid) 2	0.615
	CNS0095594	Slightly white alabastrum(diploid) 3	1.048
	CNS0095595	Whole white alabastrum(diploid) 2	0.802
	CNS0095596	Whole white alabastrum(diploid) 3	1.414
	CNS0095597	Whole white alabastrum(diploid) 4	1.913
	CNS0095598	Silvery flower (diploied) 1	0.035
	CNS0095599	Silvery flower (diploied) 2	0.075
	CNS0095600	Silvery flower (diploied) 3	0.062
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.118
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.304
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.507
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.465
	CNS0095610	Silvery flower (tetraploid) 1	0.371
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.185
	CNS0095613	Golden flower (tetraploid) 1	0.154
	CNS0095614	Golden flower (tetraploid) 2	0.007
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.214
	CRR073298	Stem 2	0.058
	CRR073299	Stem 3	0.212
	CRR073300	Leaf 1	0.408
	CRR073301	Leaf 2	0.367
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.306
	CRR073304	Juvenile bud 2	0.196
	CRR073305	Juvenile bud 3	0.252
	CRR073306	Third green 1	0.062
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.045
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.008
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.015
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.004
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.178
	CRR073318	Tawny withering 1	0.042
	CRR073319	Tawny withering 2	0.612
	CRR073320	Tawny withering 3	0.387