Gene detail

Detail information of GWHGAAZE015535

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006478216.1	0	PREDICTED: 12-oxophytodienoate reductase 2-like isoform X2 [Citrus sinensis]
Swissprot	tr\|Q8LAH7\|OPR1_ARATH	3E-178	12-oxophytodienoate reductase 1
trEMBL	tr\|M5XGD8\|M5XGD8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24531.1}
TAIR10	AT1G76680.1	2E-142	12-oxophytodienoate reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	46014412	46020283	+
GWHAAZE00000004	mRNA	46014412	46020283	+
GWHAAZE00000004	exon	46014412	46014449	+
GWHAAZE00000004	exon	46016902	46017042	+
GWHAAZE00000004	exon	46017397	46017527	+
GWHAAZE00000004	exon	46018646	46018822	+
GWHAAZE00000004	exon	46019820	46020283	+
GWHAAZE00000004	CDS	46014412	46014449	+
GWHAAZE00000004	CDS	46016902	46017042	+
GWHAAZE00000004	CDS	46017397	46017527	+
GWHAAZE00000004	CDS	46018646	46018822	+
GWHAAZE00000004	CDS	46019820	46020283	+

Transcript Sequence
>GWHTAAZE015551 ATGTGCTATCAGGGACGGACGGACGTTGGCCCGAGGGGAATTGTTTTGGCACCACTAACGCGGCAGAGATCGTACAACAATGTCCCTCAGCCACATGCTATCTTGTATTACTCTCAAAGAACCACTAAAGGGGGACTTCTCATTGCAGAAGCCACAGGAGTTTCAGATACTGCCCAAGGGTATGCATTTACACCCGGTATATGGACAAAGGAACAAGTTGAAGCATGGAAACCCGTCGTAGATGCTGTTCATGCCAAAGGTGGTATCTTCTTTTGTCAGATTTGGCATGCAGGGAGGGTTTCGAATCGGGTATATCAGCCAAATGGACAGGATCCAATTTCGTGTACAGACAAGCCATTAGCTCCTACACCAAGTTTCGATGGCATAGGTGTTGATGAATTTGCACCTCCACGACGGCTAACTGAAGATGAAATTCCTGAAATTGTCCATCATTTTAGACTTGCAGCAAGAAATGCTATGGAAGCAGGTTTTGACGGGATTGAGATCCATGGGGCTAATGGTTACCTAGTAGACCAGTTTATGAAGGACCATGTTAATGATCGAACAGACAAGTACGGAGGCTCGCTAGAGAACCGTTGCAGATTCGCTCTAGAGATTGTGGAAGCCATTTCTAATGAGATAGGACCCGACAGAGTCGGCATAAGGCTTTCACCCTTTGCGAATTTCATGGAATCTGGTGATTCAGATCCAGCAGCTCTCGGTCTTTATATGGCCAAGTCATTGAATAAGTACAACATTCTCTACTGCCACGTGATCGAGCCGAGGATGAAAACCGCAGGGGAGAAAAGCGAATCCCCCCATAGCCTTATGCCCATGAGGAAAGCTTTTAACGGTACTTTCATAAGCGCTGGTGGGTTTGGTAGGGAAGATGGTAACAAAGCTGTGGCCGAGAAGCAGACGGATCTTGTGGCTTACGGTCGGTGGTTTTAG

Network for GWHGAAZE015535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	14	316	1.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.018
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.040
	SRR3591710	White floral bud	0.134
	SRR3591711	White flower	0.010
	SRR3591712	Green floral bud	0.178
	SRR3591713	Yellow flower	0.054
SRP173429	SRR8316895	Juvenile bud stage	0.514
	SRR8316896	Juvenile bud stage	1.015
	SRR8316897	Juvenile bud stage	0.190
	SRR8316894	Third green stage	0.067
	SRR8316900	Third green stage	1.299
	SRR8316901	Third green stage	0.763
	SRR8316898	Complete white stage	0.251
	SRR8316899	Complete white stage	1.249
	SRR8316903	Complete white stage	1.011
	SRR8316902	Silver flowering stage	0.273
	SRR8316904	Silver flowering stage	0.255
	SRR8316905	Silver flowering stage	0.092
	SRR8316906	Gold flowering stage	0.173
	SRR8316907	Gold flowering stage	0.207
	SRR8316908	Gold flowering stage	0.269
SRP132670	SRR6706286	Control	0.378
	SRR6706287	Light intensity 50%	0.665
	SRR6706288	Light intensity 20%	0.475
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.481
	CNS0095593	Slightly white alabastrum(diploid) 2	0.853
	CNS0095594	Slightly white alabastrum(diploid) 3	1.687
	CNS0095595	Whole white alabastrum(diploid) 2	1.553
	CNS0095596	Whole white alabastrum(diploid) 3	1.313
	CNS0095597	Whole white alabastrum(diploid) 4	2.321
	CNS0095598	Silvery flower (diploied) 1	0.027
	CNS0095599	Silvery flower (diploied) 2	0.099
	CNS0095600	Silvery flower (diploied) 3	0.137
	CNS0095601	Golden flower (diploid) 1	0.104
	CNS0095602	Golden flower (diploid) 2	0.049
	CNS0095603	Golden flower (diploid) 3	0.172
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.379
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.455
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.659
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.054
	CNS0095610	Silvery flower (tetraploid) 1	0.016
	CNS0095611	Silvery flower (tetraploid) 2	0.105
	CNS0095612	Silvery flower (tetraploid) 3	0.107
	CNS0095613	Golden flower (tetraploid) 1	0.055
	CNS0095614	Golden flower (tetraploid) 2	0.197
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.275
	CRR073298	Stem 2	0.177
	CRR073299	Stem 3	0.354
	CRR073300	Leaf 1	0.920
	CRR073301	Leaf 2	0.506
	CRR073302	Leaf 3	0.580
	CRR073303	Juvenile bud 1	0.414
	CRR073304	Juvenile bud 2	0.633
	CRR073305	Juvenile bud 3	0.627
	CRR073306	Third green 1	0.112
	CRR073307	Third green 2	0.099
	CRR073308	Third green 3	0.249
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.003
	CRR073311	Second white 3	0.087
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.006
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.005
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.172
	CRR073318	Tawny withering 1	0.115
	CRR073319	Tawny withering 2	1.109
	CRR073320	Tawny withering 3	0.423