Gene detail

Detail information of GWHGAAZE015537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10377.1	7.814E-114	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94A82\|NUD19_ARATH	4E-111	Nudix hydrolase 19, chloroplastic (Precursor)
trEMBL	tr\|A0A068UPY8\|A0A068UPY8_COFCA	3E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313\|EMBL:CDP10377.1}
TAIR10	AT5G20070.1	3E-88	nudix hydrolase homolog 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	46062411	46065075	+
GWHAAZE00000004	mRNA	46062411	46065075	+
GWHAAZE00000004	exon	46062411	46062767	+
GWHAAZE00000004	exon	46063976	46064107	+
GWHAAZE00000004	exon	46064229	46064333	+
GWHAAZE00000004	exon	46064917	46065075	+
GWHAAZE00000004	CDS	46062411	46062767	+
GWHAAZE00000004	CDS	46063976	46064107	+
GWHAAZE00000004	CDS	46064229	46064333	+
GWHAAZE00000004	CDS	46064917	46065075	+

Transcript Sequence
>GWHTAAZE015553 GTACTCCCATTCAGGAAGGGCAAACCGTTAGCTGGTTCTTCAAGTAGTGATTCTTCAACAACCCCGAATTGGCGTCTGGGTTGGTTGAGTTTGGCAGATTGTAAGCTTTTATTACCGGGTGATTCTGAAGCTGAGATTAATTTGAATGAAGATTCTTTTGTTTATTTGGGCGGTTCCAATTCATTGGAGGAGGATGATGTTGTTCATTGGGCAATTGATGTGAGTGATGCCAGTGAGAGGTTGGGGAATAAGCTGCTTGGCGAAAGGCAGTTGTGCTTTTTGGAATTAAGGACTTTGATGGTTGCCACTGATTGGTCTGATGAGCAAGCAATGGCCGATCTTGCTGTTGCTGGTCATGCTAGAGCATTATTGGAGTGGCATAACACATCCCAATTTTGTGGACATTGTGGTGAGAAAACAGTCCCCATGGATGCTGGGAGACGGAAGAAATGCTCAAACGAGTCGTGCAAAAAGATGGTTTATCCTAGAGTTGTCATTATGCTAGTTATAGATAAAGAGAATGATCGTGCACTTTTAAGTAGACAGTCAAGATACGTGCCCAGAATGTGGAGTTGCCTTGCTGGTTTTGTAGAGCCAGGAGAAAGCTTGGAAGAGGCAGTGAGGAGAGAAACATGGGAGGAGACCGGCATTGAAGTTGATGAAGTTATCTATCACAGCTCTCAACCATGGCCTGGTATTTGCTTCATTTTCTTGTATATTTTTTATTTCTTTATATATGATACAGTGCAATAA

Network for GWHGAAZE015537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09296.12	NUDIX-like	2	126	3.70E-10
PF09297.12	zf-NADH-PPase	129	161	4.20E-07
PF00293.29	NUDIX	162	226	7.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03426	E3.6.1.22, NUDT12, nudC	Metabolic pathways	map01100
		Nicotinate and nicotinamide metabolism	map00760
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.608
	SRR3591706	second leaf	19.232
	SRR3591707	mature leaf	15.703
	SRR3591708	Shoot apex	19.739
	SRR3591709	Stem	31.835
	SRR3591710	White floral bud	15.300
	SRR3591711	White flower	18.436
	SRR3591712	Green floral bud	19.580
	SRR3591713	Yellow flower	10.299
SRP173429	SRR8316895	Juvenile bud stage	23.497
	SRR8316896	Juvenile bud stage	28.833
	SRR8316897	Juvenile bud stage	14.182
	SRR8316894	Third green stage	10.997
	SRR8316900	Third green stage	40.485
	SRR8316901	Third green stage	32.974
	SRR8316898	Complete white stage	9.785
	SRR8316899	Complete white stage	39.369
	SRR8316903	Complete white stage	17.397
	SRR8316902	Silver flowering stage	5.444
	SRR8316904	Silver flowering stage	8.269
	SRR8316905	Silver flowering stage	4.656
	SRR8316906	Gold flowering stage	12.595
	SRR8316907	Gold flowering stage	16.196
	SRR8316908	Gold flowering stage	15.029
SRP132670	SRR6706286	Control	31.656
	SRR6706287	Light intensity 50%	33.486
	SRR6706288	Light intensity 20%	35.255
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.122
	CNS0095593	Slightly white alabastrum(diploid) 2	19.421
	CNS0095594	Slightly white alabastrum(diploid) 3	17.461
	CNS0095595	Whole white alabastrum(diploid) 2	19.611
	CNS0095596	Whole white alabastrum(diploid) 3	16.330
	CNS0095597	Whole white alabastrum(diploid) 4	17.816
	CNS0095598	Silvery flower (diploied) 1	18.881
	CNS0095599	Silvery flower (diploied) 2	16.149
	CNS0095600	Silvery flower (diploied) 3	19.693
	CNS0095601	Golden flower (diploid) 1	15.393
	CNS0095602	Golden flower (diploid) 2	18.932
	CNS0095603	Golden flower (diploid) 3	17.469
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.074
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.145
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.841
	CNS0095610	Silvery flower (tetraploid) 1	17.470
	CNS0095611	Silvery flower (tetraploid) 2	13.652
	CNS0095612	Silvery flower (tetraploid) 3	8.302
	CNS0095613	Golden flower (tetraploid) 1	6.305
	CNS0095614	Golden flower (tetraploid) 2	9.301
	CNS0095615	Golden flower (tetraploid) 3	4.028
CRA001975	CRR073297	Stem 1	35.574
	CRR073298	Stem 2	35.675
	CRR073299	Stem 3	36.629
	CRR073300	Leaf 1	46.488
	CRR073301	Leaf 2	38.213
	CRR073302	Leaf 3	39.964
	CRR073303	Juvenile bud 1	37.715
	CRR073304	Juvenile bud 2	53.691
	CRR073305	Juvenile bud 3	32.314
	CRR073306	Third green 1	13.310
	CRR073307	Third green 2	8.342
	CRR073308	Third green 3	13.197
	CRR073309	Second white 1	8.726
	CRR073310	Second white 2	9.840
	CRR073311	Second white 3	10.726
	CRR073312	Silver flowering 1	4.706
	CRR073313	Silver flowering 2	4.847
	CRR073314	Silver flowering 3	5.998
	CRR073315	Gold flowering 1	16.236
	CRR073316	Gold flowering 2	26.379
	CRR073317	Gold flowering 3	14.086
	CRR073318	Tawny withering 1	16.674
	CRR073319	Tawny withering 2	15.201
	CRR073320	Tawny withering 3	18.559