Detail information of GWHGAAZE015538


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP21182.11.26821E-38unnamed protein product [Coffea canephora]
Swissprottr|Q94A82|NUD19_ARATH8E-36Nudix hydrolase 19, chloroplastic (Precursor)
trEMBLtr|A0A068VKR9|A0A068VKR9_COFCA5E-39Coffea canephora DH200=94 genomic scaffold, scaffold_2705 {ECO:0000313|EMBL:CDP21182.1}
TAIR10AT5G20070.18E-31nudix hydrolase homolog 19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene4607293246073270+
GWHAAZE00000004mRNA4607293246073270+
GWHAAZE00000004exon4607293246073270+
GWHAAZE00000004CDS4607293246073270+
Transcript Sequence

Network for GWHGAAZE015538

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03426E3.6.1.22, NUDT12, nudC Metabolic pathways map01100
Nicotinate and nicotinamide metabolismmap00760
Peroxisomemap04146

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.927
SRR3591706second leaf15.434
SRR3591707mature leaf15.219
SRR3591708Shoot apex21.379
SRR3591709Stem30.295
SRR3591710White floral bud12.854
SRR3591711White flower12.273
SRR3591712Green floral bud16.392
SRR3591713Yellow flower14.023
SRP173429 SRR8316895Juvenile bud stage 17.585
SRR8316896Juvenile bud stage 25.690
SRR8316897Juvenile bud stage 10.499
SRR8316894Third green stage 7.416
SRR8316900Third green stage 28.613
SRR8316901Third green stage 26.500
SRR8316898Complete white stage 7.605
SRR8316899Complete white stage 30.083
SRR8316903Complete white stage 15.488
SRR8316902Silver flowering stage6.179
SRR8316904Silver flowering stage6.776
SRR8316905Silver flowering stage3.197
SRR8316906Gold flowering stage 6.936
SRR8316907Gold flowering stage 8.303
SRR8316908Gold flowering stage 9.871
SRP132670SRR6706286Control17.454
SRR6706287Light intensity 50%19.410
SRR6706288Light intensity 20%21.539
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.209
CNS0095593Slightly white alabastrum(diploid) 225.802
CNS0095594Slightly white alabastrum(diploid) 327.264
CNS0095595Whole white alabastrum(diploid) 224.784
CNS0095596Whole white alabastrum(diploid) 325.860
CNS0095597Whole white alabastrum(diploid) 420.700
CNS0095598Silvery flower (diploied) 120.494
CNS0095599Silvery flower (diploied) 217.078
CNS0095600Silvery flower (diploied) 315.027
CNS0095601Golden flower (diploid) 120.131
CNS0095602Golden flower (diploid) 210.876
CNS0095603Golden flower (diploid) 316.438
CNS0095604Slightly white alabastrum(tetraploid) 118.042
CNS0095605Slightly white alabastrum(tetraploid) 213.023
CNS0095606Slightly white alabastrum(tetraploid) 323.934
CNS0095607Whole white alabastrum(tetraploid) 112.151
CNS0095608Whole white alabastrum(tetraploid) 210.888
CNS0095609Whole white alabastrum(tetraploid) 316.870
CNS0095610Silvery flower (tetraploid) 117.058
CNS0095611Silvery flower (tetraploid) 213.780
CNS0095612Silvery flower (tetraploid) 39.335
CNS0095613Golden flower (tetraploid) 19.993
CNS0095614Golden flower (tetraploid) 29.622
CNS0095615Golden flower (tetraploid) 33.047
CRA001975CRR073297Stem 123.691
CRR073298Stem 222.564
CRR073299Stem 321.987
CRR073300Leaf 129.866
CRR073301Leaf 228.316
CRR073302Leaf 322.101
CRR073303Juvenile bud 131.296
CRR073304Juvenile bud 227.396
CRR073305Juvenile bud 324.662
CRR073306Third green 17.285
CRR073307Third green 24.607
CRR073308Third green 37.062
CRR073309Second white 13.842
CRR073310Second white 28.609
CRR073311Second white 35.046
CRR073312Silver flowering 12.914
CRR073313Silver flowering 22.342
CRR073314Silver flowering 36.416
CRR073315Gold flowering 110.249
CRR073316Gold flowering 213.024
CRR073317Gold flowering 34.686
CRR073318Tawny withering 111.086
CRR073319Tawny withering 211.619
CRR073320Tawny withering 311.915