Gene detail

Detail information of GWHGAAZE015550

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009622455.1	PREDICTED: nucleolar GTP-binding protein 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9C6I8\|NOG1_ARATH	Nucleolar GTP-binding protein 1
trEMBL	tr\|I1LJW2\|I1LJW2_SOYBN	Nucleolar GTP-binding protein 1 {ECO:0000256\|PIRNR:PIRNR038919}
TAIR10	AT1G50920.1	Nucleolar GTP-binding protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	46868138	46870159	-
GWHAAZE00000004	mRNA	46868138	46870159	-
GWHAAZE00000004	exon	46869193	46870159	-
GWHAAZE00000004	exon	46868963	46869153	-
GWHAAZE00000004	exon	46868138	46868929	-
GWHAAZE00000004	CDS	46869193	46870159	-
GWHAAZE00000004	CDS	46868963	46869153	-
GWHAAZE00000004	CDS	46868138	46868929	-

Transcript Sequence
>GWHTAAZE015566 ATGGTGCAGTATAATTTCAAGAAAATCACAGTTGTCCCTGGTGGGAAAGACTTCATTGATATTATCCTCTCTCGTACCCAAAGGCAAACACCGACTGTTGTTCACAAGGGCTATGCTATTAACCGTATTCGTCAGTTTTATATGCGCAAAGTGAAGTACACTCAAACAAATTTCCATGAAAAGCTGTCCACCATCATCGAGGAGTTTCCTCGGCTCGATGATATCCATCCTTTCTATGGCGATCTTCTTCACGTTCTTTATAACAAAGACCATTACAAGCTAGCCCTTGGTCAAATCAATACTTCAAGGAATCTCATTGGTAAGATTGCAAAGGATTATGTTAAATTGTTGAAGTATGGCGACTCACTCTACCGATGCAAGGCTTTGAAGGTCGCTGCTCTGGGCCGAATGTGCACTGTCGTAAAGCGAATTGGACCAAGTTTGGCTTATCTTGAACAGATTAGGCAACATATGGCAAGGCTGCCTTCAATTGACCCCAACACAAGGACGATCTTGATTTGCGGGTACCCGAATGTGGGCAAGAGTTCTTTCATTAATAAAATTACTCGGGCTGATGTTGATGTGCAGCCCTATGCTTTCACTACCAAGTCCTTGTTTGTTGGTCATACTGACTATAAATACCTAAGGTACCAGGTGATTGATACTCCGGGGATTTTGGACCGTCCATTCGAGGATCGTAATATCATTGAGATGTGCAGTATTACGGCCCTAGCTCATCTAAGAGCAGCTGTGTTGTTCTTCTTGGATATATCTGGGTCTTGCGGGTACAGCATTGCTCAGCAAGCGGCACTTTTTCACAGCATCAAGTCGCTCTTTATGAACAAGCCGCTGATTATAGTCTGCAACAAGACTGATTTGCAGCCGTTGGATGGAATATCTGAAGAAGACAAGAGGTTGGTCGAAGAGATGAAATCGGAAGCTTTAAAGACTGTGATTGGTCAGGGTGTGAGCACGTTGACCGAGGAAGGGGTAATTTCGGTAAAAAATGCAGCTTGTGAGAGGCTATTGGATCAAAGGGTGGAATTAAAGATGAAGTCTAAAAAGATAAACGAGTGCTTAAACCGTTTTCATGTTGCAATGCCGAAGCCAAGGGACCAGAAAGAAAGGCCAGCGTGTATACCTCAAGCTGTATTAGAAAAGGCTAAGAAGAAGCTTGAGAAGGATCTAGAGGATGACAATGGTGGTGCGGGTGTGTACTCTGCTAGCTTGAAGAAGCATTATATCTTAGCACATGATGAATGGAAAGAAGATATTATGCCTGAAATCCTCGATGGGCATAATGTATACGACTTTGTTGATCCCGATATTTTGCAAAGGCTTGAGGAATTGGAGAGAGAAGAGGGTCTTCGCCAGGAGCAAGATGGTGAAGATGATGATGTTGAAATGGGTACTGATTTGACCCCAGAAGAAAAAGAGGCACTGGCCGAGATTAGGAAAAAGAAAAGTCTTCTTATCCAACAGCATAGGATTAAGAAGAGCACTGCCGAGAGCCGACCAACTGTGCCAAGGAAATTTGACAAGGACAAGCAGTTCACATCGAAGAGAATGGGGCGGCAACTTAAGTCTGTGGGGCTTGATCCCAGCTTAGCAATTGAACGCGCCCGTAGCAAATCGAGGGGACGTAAGAGGGAAAGATCGATTGATAGAGATGATGCAATGGACATTGATGGTGAACAATCTAATAAGAAGAGACTGCGTACCTCAATTTCACGGTCAAGGTCGGTGTCTAGACCTCCACACGAGATTGTACCAGGAGAGGGATACAGGGATTCGGCTCAGAAGATGAAGGCCATGGTATTGGCTAAGCAATCGTCGAAAAAGAGAAACAAGGATGCCCGGCGGGGAGAAGCAGATAGAGTCATTCCAACGCTTAGACCGAAGCACTTGTTCTCTGGGAAGCGAGGCAAGGGGAAGACCGATAGACGCTAG

Network for GWHGAAZE015550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17835.2	NOG1_N	6	165	1.00E-57
PF06858.15	NOG1	236	292	1.60E-24
PF08155.12	NOGCT	390	443	1.30E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06943	NOG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005730	cellular_component	nucleolus
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.102
	SRR3591706	second leaf	20.303
	SRR3591707	mature leaf	13.314
	SRR3591708	Shoot apex	60.263
	SRR3591709	Stem	28.229
	SRR3591710	White floral bud	25.523
	SRR3591711	White flower	42.065
	SRR3591712	Green floral bud	49.358
	SRR3591713	Yellow flower	24.153
SRP173429	SRR8316895	Juvenile bud stage	40.093
	SRR8316896	Juvenile bud stage	54.795
	SRR8316897	Juvenile bud stage	23.237
	SRR8316894	Third green stage	21.492
	SRR8316900	Third green stage	60.553
	SRR8316901	Third green stage	52.341
	SRR8316898	Complete white stage	6.870
	SRR8316899	Complete white stage	52.162
	SRR8316903	Complete white stage	19.474
	SRR8316902	Silver flowering stage	10.220
	SRR8316904	Silver flowering stage	13.567
	SRR8316905	Silver flowering stage	6.777
	SRR8316906	Gold flowering stage	22.742
	SRR8316907	Gold flowering stage	20.735
	SRR8316908	Gold flowering stage	26.985
SRP132670	SRR6706286	Control	69.173
	SRR6706287	Light intensity 50%	65.996
	SRR6706288	Light intensity 20%	69.608
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.233
	CNS0095593	Slightly white alabastrum(diploid) 2	48.864
	CNS0095594	Slightly white alabastrum(diploid) 3	46.493
	CNS0095595	Whole white alabastrum(diploid) 2	43.382
	CNS0095596	Whole white alabastrum(diploid) 3	43.517
	CNS0095597	Whole white alabastrum(diploid) 4	30.862
	CNS0095598	Silvery flower (diploied) 1	62.111
	CNS0095599	Silvery flower (diploied) 2	53.296
	CNS0095600	Silvery flower (diploied) 3	40.104
	CNS0095601	Golden flower (diploid) 1	58.595
	CNS0095602	Golden flower (diploid) 2	48.722
	CNS0095603	Golden flower (diploid) 3	49.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.830
	CNS0095610	Silvery flower (tetraploid) 1	32.517
	CNS0095611	Silvery flower (tetraploid) 2	37.090
	CNS0095612	Silvery flower (tetraploid) 3	17.643
	CNS0095613	Golden flower (tetraploid) 1	16.164
	CNS0095614	Golden flower (tetraploid) 2	26.544
	CNS0095615	Golden flower (tetraploid) 3	14.541
CRA001975	CRR073297	Stem 1	114.883
	CRR073298	Stem 2	114.211
	CRR073299	Stem 3	101.634
	CRR073300	Leaf 1	107.614
	CRR073301	Leaf 2	103.157
	CRR073302	Leaf 3	104.015
	CRR073303	Juvenile bud 1	98.498
	CRR073304	Juvenile bud 2	55.598
	CRR073305	Juvenile bud 3	94.948
	CRR073306	Third green 1	7.983
	CRR073307	Third green 2	7.137
	CRR073308	Third green 3	10.669
	CRR073309	Second white 1	13.130
	CRR073310	Second white 2	12.680
	CRR073311	Second white 3	11.146
	CRR073312	Silver flowering 1	10.744
	CRR073313	Silver flowering 2	14.161
	CRR073314	Silver flowering 3	10.564
	CRR073315	Gold flowering 1	25.625
	CRR073316	Gold flowering 2	35.545
	CRR073317	Gold flowering 3	35.028
	CRR073318	Tawny withering 1	63.718
	CRR073319	Tawny withering 2	51.727
	CRR073320	Tawny withering 3	68.687