Gene detail

Detail information of GWHGAAZE015556

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269211.1	0	PREDICTED: alpha-(1,4)-fucosyltransferase [Vitis vinifera]
Swissprot	tr\|Q9C8W3\|FUT13_ARATH	0	Alpha-(1,4)-fucosyltransferase
trEMBL	tr\|A5BCQ1\|A5BCQ1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67769.1}
TAIR10	AT1G71990.1	2E-163	fucosyltransferase 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	47035698	47048491	-
GWHAAZE00000004	mRNA	47035698	47048491	-
GWHAAZE00000004	exon	47048440	47048491	-
GWHAAZE00000004	exon	47042807	47043180	-
GWHAAZE00000004	exon	47036699	47036872	-
GWHAAZE00000004	exon	47035698	47036267	-
GWHAAZE00000004	CDS	47048440	47048491	-
GWHAAZE00000004	CDS	47042807	47043180	-
GWHAAZE00000004	CDS	47036699	47036872	-
GWHAAZE00000004	CDS	47035698	47036267	-

Transcript Sequence
>GWHTAAZE015572 ATGCGTTTTTCTGGCAGCAGAGCAGGTCCCATGTGCCACTACTTTTCCAATGCAAAAGATTCCCTATCCTTGTATTCAAATTCAAAATCTACTCCAGACCCATTTAGGGACTTATTGGGTGCCTTCAAAAAGTGGGATTCTCAAGTGGGTTGTTATCAATTTAGGGAGAAAAACAAAGGGTTTTTGAGAAATGGGTCAGTGCCATTTTCTTCTTCTTCAATTCAAGATGGTGAGGGTAAATTAGATTGCAGTGAATTGAAGATGAATCATGTTGGGGTTTTGGTCAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTATTCGTGTCGATGTGGGTTGAGCTGTTTGTGGACCAAATCTTCAGTTCTTGCTGATAAACCAGATGCTTTGTTGTTTGAGACCACTACACCTCCTCTTCAGAGGCGTAATGGAGATCCACTTCGTGTATACATGGATCTTGAGGCCGGCAGAAAGCGGTCCGGATTCGAGGATATTTTTGTCGGTTATCATGCGAAAGACGATGTTCAGTCAACTTATGCTGGTGCTCTATTTCACAACAATCGAAATTACCATTTGTCGTCTTACAAGAGCAATGATACCCTTGTTTATTGGTCGTCGTCTCGTTGCCTCCCTCAGAGGAACCGGCTCGCTAAGAGCCTACTAAGCTTGCTTCCTCACCACTCATTTGGTAAGTGCTTGAACAACGTAGGGGGCCTAGACATGGCACTCTCTCTCTACCCCGAGTGCATCAAGGACTCGACCGTCCCCCCTCAATGGTGGGACCACTTACACTGCGCCATGTCACACTACAAGTTTGTCCTTGCGATTGAGAACACGGTCACGGAGAGCTATGTGACAGAGAAGTTGTTCTATGCGCTCGACTCGGGTGCAGTCCCCATCTACTTCGGGGCCCCAAATGTGTGGGACTTTGTGCCCCCGCACTCGATAATAGACGGGAGTACGTTCCGGTCAATGGAGGAGCTGGCTTCGTACGTTAGAGCACTTGCTAATGACCCGATCGCATACGCAGAGTACCACGCATGGAGGAGATGCGGTGTTTTGGGTAACTATGGAAAGGCGCGTGCTGCAAGTATTGACACGTTGCCGTGTCGACTTTGTGAGGCCGTGAGCAGAAAATCCGGGAGAAAAGCTAGAGCCTTGTGA

Network for GWHGAAZE015556

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00852.20	Glyco_transf_10	202	382	2.00E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14412	FUT13, FucTC	Metabolic pathways	map01100
K14412	FUT13, FucTC	Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0008417	molecular_function	fucosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.782
	SRR3591706	second leaf	7.877
	SRR3591707	mature leaf	7.135
	SRR3591708	Shoot apex	12.546
	SRR3591709	Stem	14.385
	SRR3591710	White floral bud	11.728
	SRR3591711	White flower	14.097
	SRR3591712	Green floral bud	13.974
	SRR3591713	Yellow flower	13.764
SRP173429	SRR8316895	Juvenile bud stage	8.542
	SRR8316896	Juvenile bud stage	12.303
	SRR8316897	Juvenile bud stage	8.039
	SRR8316894	Third green stage	4.382
	SRR8316900	Third green stage	11.832
	SRR8316901	Third green stage	12.819
	SRR8316898	Complete white stage	5.221
	SRR8316899	Complete white stage	13.265
	SRR8316903	Complete white stage	8.647
	SRR8316902	Silver flowering stage	6.189
	SRR8316904	Silver flowering stage	8.065
	SRR8316905	Silver flowering stage	4.309
	SRR8316906	Gold flowering stage	14.823
	SRR8316907	Gold flowering stage	16.131
	SRR8316908	Gold flowering stage	20.272
SRP132670	SRR6706286	Control	9.341
	SRR6706287	Light intensity 50%	9.631
	SRR6706288	Light intensity 20%	10.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.373
	CNS0095593	Slightly white alabastrum(diploid) 2	12.760
	CNS0095594	Slightly white alabastrum(diploid) 3	14.890
	CNS0095595	Whole white alabastrum(diploid) 2	10.559
	CNS0095596	Whole white alabastrum(diploid) 3	9.866
	CNS0095597	Whole white alabastrum(diploid) 4	12.167
	CNS0095598	Silvery flower (diploied) 1	9.304
	CNS0095599	Silvery flower (diploied) 2	7.613
	CNS0095600	Silvery flower (diploied) 3	11.185
	CNS0095601	Golden flower (diploid) 1	10.616
	CNS0095602	Golden flower (diploid) 2	13.890
	CNS0095603	Golden flower (diploid) 3	13.459
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.798
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.537
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.563
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.107
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.628
	CNS0095610	Silvery flower (tetraploid) 1	11.872
	CNS0095611	Silvery flower (tetraploid) 2	8.942
	CNS0095612	Silvery flower (tetraploid) 3	13.538
	CNS0095613	Golden flower (tetraploid) 1	10.443
	CNS0095614	Golden flower (tetraploid) 2	12.009
	CNS0095615	Golden flower (tetraploid) 3	14.576
CRA001975	CRR073297	Stem 1	15.905
	CRR073298	Stem 2	15.872
	CRR073299	Stem 3	17.940
	CRR073300	Leaf 1	17.426
	CRR073301	Leaf 2	20.305
	CRR073302	Leaf 3	17.765
	CRR073303	Juvenile bud 1	15.512
	CRR073304	Juvenile bud 2	15.148
	CRR073305	Juvenile bud 3	17.333
	CRR073306	Third green 1	15.750
	CRR073307	Third green 2	19.392
	CRR073308	Third green 3	18.025
	CRR073309	Second white 1	21.361
	CRR073310	Second white 2	19.717
	CRR073311	Second white 3	19.514
	CRR073312	Silver flowering 1	23.839
	CRR073313	Silver flowering 2	26.794
	CRR073314	Silver flowering 3	20.563
	CRR073315	Gold flowering 1	7.729
	CRR073316	Gold flowering 2	13.556
	CRR073317	Gold flowering 3	11.285
	CRR073318	Tawny withering 1	18.238
	CRR073319	Tawny withering 2	20.702
	CRR073320	Tawny withering 3	13.791