Gene detail

Detail information of GWHGAAZE015591

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP17874.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q38869\|CDPK4_ARATH	Calcium-dependent protein kinase 4
trEMBL	tr\|A0A068VBD3\|A0A068VBD3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_186 {ECO:0000313\|EMBL:CDP17874.1}
TAIR10	AT4G09570.1	calcium-dependent protein kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	49728182	49734681	+
GWHAAZE00000004	mRNA	49728182	49734681	+
GWHAAZE00000004	exon	49728182	49728308	+
GWHAAZE00000004	exon	49728947	49729322	+
GWHAAZE00000004	exon	49730476	49730541	+
GWHAAZE00000004	exon	49730742	49730857	+
GWHAAZE00000004	exon	49730962	49731105	+
GWHAAZE00000004	exon	49731541	49731693	+
GWHAAZE00000004	exon	49732034	49732149	+
GWHAAZE00000004	exon	49732633	49732800	+
GWHAAZE00000004	exon	49733616	49733840	+
GWHAAZE00000004	exon	49734532	49734681	+
GWHAAZE00000004	CDS	49728182	49728308	+
GWHAAZE00000004	CDS	49728947	49729322	+
GWHAAZE00000004	CDS	49730476	49730541	+
GWHAAZE00000004	CDS	49730742	49730857	+
GWHAAZE00000004	CDS	49730962	49731105	+
GWHAAZE00000004	CDS	49731541	49731693	+
GWHAAZE00000004	CDS	49732034	49732149	+
GWHAAZE00000004	CDS	49732633	49732800	+
GWHAAZE00000004	CDS	49733616	49733840	+
GWHAAZE00000004	CDS	49734532	49734681	+

Transcript Sequence
>GWHTAAZE015607 ATGACAAAACCAACCTCATCAATTCTCCCTTATCAAACCCCACGCTTAAGGGATCACTACCTGCTTGGCAAGAAGCTGGGTCAAGGCCAATTCGGCACTACCTATCTCTGCACCGAGAAATCTACAGGTATAGATTATGCCTGCAAATCCATCGCCAAGCGCAAGCTCCTCTGCCGAGACGATTATGAGGATGTGTGGAGAGAGATTCAGATAATGCACCATTTGTCCGAGCACCCGCACGTTGTGCGGATCAAGGGGACATATGAGGACAACGTGTTTGTGCATCTCGTAATGGAATTATGTGGCGGTGGGGAGTTGTTCGATCGGATTGTTCAGAAAGGGCAATACAGTGAACATCAGGCGGCACAATTGATGAAGGTCATTGTTGGTGTTGTAGAAGCTTGCCACTCGCTTGGGGTTATGCATAGGGATCTGAAACCCGAGAATTTCTTGTTTGATAGTCCTGCGGAGGATGCTACCCTTAAGGCTATCGATTTTGGATTGGTCTGCATTGGTCTGCTTAAAATGTCAACCAATGCAATCGTGCCATATCAACATGTCACAGTTTTACAAAGTGAATGGCGTGTTATGGTCTTAATCGCAAAATACATACACGCGTACATATTTATATCCTTGAAAACTTACATTTCAGTTATGAATGATGTCATCCATGTTTTTTGGGATGGGCAGTACCTTTCCGATGTTGTTGGAAGCCCCTATTATGTCGCACCTGAAGTTTTGCATAAATATTATGGACCTGAATCCGATGTATGGAGTGCCGGTGTTATACTGTACATCTTACTATGTGGGGTTCCACCTTTTTGGGCAGAAACGGACTCTGGTATCTTCAGACAAATTTTGAAAGGACACATAGATTTTGTATCTGAACCGTGGCCTCACATTTCAGAAAGTGCAAAGGATTTGATAAGGAAGATGCTTGATAGAAACCCGAGGCAAAGAATATCTGCTCATGAAGTCCTATGTCACCCATGGATCGTGGATGACAGAGTTGCCCCAGACAAACCTTTGGACTCTGCAGTTTTGTCACGTTTGAAGCAGTTCTCAGCTATGAACAAGCTTAAAAAGATGGCTCTGCGTGTAATAGCAGAAAGTCTTTCAGAAGAAGAGATTGGTGGCTTGAAGCAGTTGTTCAAGATGATTGACACAGACAACAGCGGTGCAATTACATTTGAGGAACTGAAACAGGGTTTAAAAAGAGTAGGATCTAATCTGATGGAGTCTGAGATCAAGGATCTTATGAATGCGGCTGATATTGATAATAGTGGCACAATTGACTACGGTGAGTTTCTTGCCGCTACCTTGCACTTGAATAAGATGGAGAGAGAAGAGAATTTGCTAGCGGCCTTCTCTTTTTTTGACAAGGATGGCAGTGGCTATATAACCATTGATGAGCTTCAACAAGCTTGCAAAGATTTTGGCTTAAGCGAAGTTCAATGGGAGGATATAATCAAAGAAATAGATCAAGACAATGATGGACGTATAGACTATGGGGAATTTGCTGCAATGATGAGAAAAGGCGATGGAGGGGTAGGAAGCAGAACCATGAGAGGCAATTTGAATTTTAAATTGGAAGAAGCCATTCAAGCCGCCGAGAAAATGGCGAAAACGGAAAATAATTGA

Network for GWHGAAZE015591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	22	170	3.60E-41
PF00069.26	Pkinase	231	332	7.10E-26
PF13499.7	EF-hand_7	380	440	6.80E-11
PF13499.7	EF-hand_7	450	511	5.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.306
	SRR3591706	second leaf	2.086
	SRR3591707	mature leaf	5.282
	SRR3591708	Shoot apex	1.557
	SRR3591709	Stem	2.006
	SRR3591710	White floral bud	41.192
	SRR3591711	White flower	10.528
	SRR3591712	Green floral bud	91.554
	SRR3591713	Yellow flower	56.043
SRP173429	SRR8316895	Juvenile bud stage	2.467
	SRR8316896	Juvenile bud stage	13.519
	SRR8316897	Juvenile bud stage	8.490
	SRR8316894	Third green stage	6.036
	SRR8316900	Third green stage	32.435
	SRR8316901	Third green stage	32.855
	SRR8316898	Complete white stage	2.780
	SRR8316899	Complete white stage	1.291
	SRR8316903	Complete white stage	4.559
	SRR8316902	Silver flowering stage	4.001
	SRR8316904	Silver flowering stage	6.497
	SRR8316905	Silver flowering stage	2.848
	SRR8316906	Gold flowering stage	15.744
	SRR8316907	Gold flowering stage	11.331
	SRR8316908	Gold flowering stage	12.002
SRP132670	SRR6706286	Control	10.496
	SRR6706287	Light intensity 50%	11.727
	SRR6706288	Light intensity 20%	10.060
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.691
	CNS0095593	Slightly white alabastrum(diploid) 2	19.156
	CNS0095594	Slightly white alabastrum(diploid) 3	24.961
	CNS0095595	Whole white alabastrum(diploid) 2	32.306
	CNS0095596	Whole white alabastrum(diploid) 3	36.526
	CNS0095597	Whole white alabastrum(diploid) 4	37.816
	CNS0095598	Silvery flower (diploied) 1	4.334
	CNS0095599	Silvery flower (diploied) 2	2.967
	CNS0095600	Silvery flower (diploied) 3	3.872
	CNS0095601	Golden flower (diploid) 1	3.378
	CNS0095602	Golden flower (diploid) 2	10.378
	CNS0095603	Golden flower (diploid) 3	9.668
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.156
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.133
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.768
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.861
	CNS0095610	Silvery flower (tetraploid) 1	2.257
	CNS0095611	Silvery flower (tetraploid) 2	1.621
	CNS0095612	Silvery flower (tetraploid) 3	5.274
	CNS0095613	Golden flower (tetraploid) 1	8.896
	CNS0095614	Golden flower (tetraploid) 2	3.715
	CNS0095615	Golden flower (tetraploid) 3	41.814
CRA001975	CRR073297	Stem 1	5.721
	CRR073298	Stem 2	8.736
	CRR073299	Stem 3	3.578
	CRR073300	Leaf 1	25.975
	CRR073301	Leaf 2	19.516
	CRR073302	Leaf 3	10.229
	CRR073303	Juvenile bud 1	18.269
	CRR073304	Juvenile bud 2	18.147
	CRR073305	Juvenile bud 3	1.081
	CRR073306	Third green 1	12.303
	CRR073307	Third green 2	9.706
	CRR073308	Third green 3	8.446
	CRR073309	Second white 1	5.527
	CRR073310	Second white 2	5.855
	CRR073311	Second white 3	8.236
	CRR073312	Silver flowering 1	16.394
	CRR073313	Silver flowering 2	14.785
	CRR073314	Silver flowering 3	14.881
	CRR073315	Gold flowering 1	10.462
	CRR073316	Gold flowering 2	11.013
	CRR073317	Gold flowering 3	5.162
	CRR073318	Tawny withering 1	3.339
	CRR073319	Tawny withering 2	4.488
	CRR073320	Tawny withering 3	3.399