Gene detail

Detail information of GWHGAAZE015616

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007201740.1	0	hypothetical protein PRUPE_ppa002237mg [Prunus persica]
Swissprot	tr\|O22938\|Y2182_ARATH	4E-65	Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 (Precursor)
trEMBL	tr\|M5VNY0\|M5VNY0_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02939.1}
TAIR10	AT1G34420.1	3E-99	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	50753847	50755786	+
GWHAAZE00000004	mRNA	50753847	50755786	+
GWHAAZE00000004	exon	50753847	50754705	+
GWHAAZE00000004	exon	50755479	50755786	+
GWHAAZE00000004	CDS	50753847	50754705	+
GWHAAZE00000004	CDS	50755479	50755786	+

Transcript Sequence
>GWHTAAZE015632 ATGATTCCCAAGTTTCAGAACTTTGTAACTGTCGATACGAGTGGTAATAAAGAACTCATCAATTCCACAACGTCGAACACTTCACCTGGCTTCCAGAGGAGGAAGCGAACTGTTGCTATAGGGGTGGTGGTTGGGGCTCTAGCTGGTGTGCTTGCATTAGGCATAGTTGTAACCATTGCTCTGACATTTTCGAGGCGGTTCTATAGGGTCAATGATGAGCACGTGGAAATGGGTGAAAGGGGCTCACCTCGGCCCGAAGTGATCGAGGGTGTTTTGTTAACCTCAAACGGCATTCATAGATCAAATATCGACTTTTCTACGGCCATGGAAGCAGTAACAAACCATTCTAACATCTTCCTGAAAACCCGATTTTCGACTTACTACAAAGCCATAATGCCATCAGGCTCAAGATATATCGTCAAGAAACTGAATTGGACCGACAAAATATTTCAATTGGGTAGCCATGAAAAATTCGGGGAAGAGCTCGAGGTTCTAGGGAGGTTGAGTAATTCGAGTGTGATGACTCCACTTGCTTACGTTTTGACCGTTGATCATGCTTATTTGTTCTATGAGTTTGCCGAGAAGGGCACGCTTTTCGATGTTTTGCACGGTGGAGGGAACGGTTTGGATTGGTCGAGCCGTTACAGTATAGCGATAGGAGTGGCTCAGGGCTTGGCGTTTCTTCATGGGTCCCCCTCAGGTCCGATTCTTTTGCTTGATCTTTCAAGTAAGAGCATTTTGCTTAAGTCTTTAAAGGAGCCTCAAGTTGGTGATATTGAGCTTTGTAAGGTGATTGATCCTTCGAAAAGTACAGGAAGTCTTTCTGCTGTTGCTGGATCTGTTGGCTACATTCCTCCAGAGTATGCATACACGATGAGGGTGACTATGGCCGGCAATGTATATAGCTTTGGGGTCATTTTATTGGAAATGGTGACTGGAAAAGCAGCGGTTAGCGAGGGGATTGAGTTAGCGAAATGGGTGTTGAGCAAGTCCACAAGGAAGGGCAATTGGGACCACATTCTTGATTATAGTGTGAGCCGAGGGTCAGTGTCGGTTAGGACCCAAATGCTATCGGTCCTGAGGATTGCTCTGGCCTGTGTTAACGTCTCACCGGAAGCAAGGCCGAAGATGAAGAGCGTGTTGAGGATGCTGCTAAATGCAAGGTAA

Network for GWHGAAZE015616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	124	382	7.10E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.589
	SRR3591706	second leaf	11.583
	SRR3591707	mature leaf	19.421
	SRR3591708	Shoot apex	15.923
	SRR3591709	Stem	40.170
	SRR3591710	White floral bud	16.042
	SRR3591711	White flower	31.048
	SRR3591712	Green floral bud	9.948
	SRR3591713	Yellow flower	14.934
SRP173429	SRR8316895	Juvenile bud stage	20.315
	SRR8316896	Juvenile bud stage	13.421
	SRR8316897	Juvenile bud stage	30.843
	SRR8316894	Third green stage	4.334
	SRR8316900	Third green stage	3.878
	SRR8316901	Third green stage	5.377
	SRR8316898	Complete white stage	1.249
	SRR8316899	Complete white stage	10.179
	SRR8316903	Complete white stage	2.617
	SRR8316902	Silver flowering stage	2.414
	SRR8316904	Silver flowering stage	3.431
	SRR8316905	Silver flowering stage	1.400
	SRR8316906	Gold flowering stage	9.104
	SRR8316907	Gold flowering stage	6.015
	SRR8316908	Gold flowering stage	12.840
SRP132670	SRR6706286	Control	5.069
	SRR6706287	Light intensity 50%	4.948
	SRR6706288	Light intensity 20%	4.184
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.080
	CNS0095593	Slightly white alabastrum(diploid) 2	17.964
	CNS0095594	Slightly white alabastrum(diploid) 3	21.363
	CNS0095595	Whole white alabastrum(diploid) 2	11.582
	CNS0095596	Whole white alabastrum(diploid) 3	1.579
	CNS0095597	Whole white alabastrum(diploid) 4	7.852
	CNS0095598	Silvery flower (diploied) 1	39.436
	CNS0095599	Silvery flower (diploied) 2	27.815
	CNS0095600	Silvery flower (diploied) 3	11.517
	CNS0095601	Golden flower (diploid) 1	33.859
	CNS0095602	Golden flower (diploid) 2	26.412
	CNS0095603	Golden flower (diploid) 3	21.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.469
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.792
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.752
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.332
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.573
	CNS0095610	Silvery flower (tetraploid) 1	11.776
	CNS0095611	Silvery flower (tetraploid) 2	10.011
	CNS0095612	Silvery flower (tetraploid) 3	12.289
	CNS0095613	Golden flower (tetraploid) 1	6.741
	CNS0095614	Golden flower (tetraploid) 2	9.601
	CNS0095615	Golden flower (tetraploid) 3	6.064
CRA001975	CRR073297	Stem 1	13.360
	CRR073298	Stem 2	10.728
	CRR073299	Stem 3	13.860
	CRR073300	Leaf 1	7.904
	CRR073301	Leaf 2	13.501
	CRR073302	Leaf 3	6.083
	CRR073303	Juvenile bud 1	6.091
	CRR073304	Juvenile bud 2	3.418
	CRR073305	Juvenile bud 3	7.833
	CRR073306	Third green 1	3.847
	CRR073307	Third green 2	1.463
	CRR073308	Third green 3	3.104
	CRR073309	Second white 1	3.674
	CRR073310	Second white 2	4.192
	CRR073311	Second white 3	4.543
	CRR073312	Silver flowering 1	6.551
	CRR073313	Silver flowering 2	5.365
	CRR073314	Silver flowering 3	5.018
	CRR073315	Gold flowering 1	17.644
	CRR073316	Gold flowering 2	31.605
	CRR073317	Gold flowering 3	20.139
	CRR073318	Tawny withering 1	13.439
	CRR073319	Tawny withering 2	25.360
	CRR073320	Tawny withering 3	20.253