Detail information of GWHGAAZE015633


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02214.13.08718E-86unnamed protein product [Coffea canephora]
Swissprottr|Q9STT2|VPS29_ARATH2E-78Vacuolar protein sorting-associated protein 29
trEMBLtr|A0A068U247|A0A068U247_COFCA1E-86Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02214.1}
TAIR10AT3G47810.31E-62Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5109729551102206-
GWHAAZE00000004mRNA5109729551102206-
GWHAAZE00000004exon5110207551102206-
GWHAAZE00000004exon5109729551097615-
GWHAAZE00000004CDS5110207551102206-
GWHAAZE00000004CDS5109729551097615-
Transcript Sequence

Network for GWHGAAZE015633

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12850.8Metallophos_2551111.10E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18467VPS29 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf83.447
SRR3591706second leaf55.842
SRR3591707mature leaf49.666
SRR3591708Shoot apex69.709
SRR3591709Stem60.216
SRR3591710White floral bud182.393
SRR3591711White flower269.889
SRR3591712Green floral bud176.333
SRR3591713Yellow flower411.351
SRP173429 SRR8316895Juvenile bud stage 59.638
SRR8316896Juvenile bud stage 72.980
SRR8316897Juvenile bud stage 42.935
SRR8316894Third green stage 32.500
SRR8316900Third green stage 143.097
SRR8316901Third green stage 155.871
SRR8316898Complete white stage 79.398
SRR8316899Complete white stage 157.902
SRR8316903Complete white stage 89.697
SRR8316902Silver flowering stage102.517
SRR8316904Silver flowering stage107.937
SRR8316905Silver flowering stage68.288
SRR8316906Gold flowering stage 252.651
SRR8316907Gold flowering stage 212.075
SRR8316908Gold flowering stage 227.528
SRP132670SRR6706286Control143.336
SRR6706287Light intensity 50%149.761
SRR6706288Light intensity 20%149.905
CNP0000432CNS0095592Slightly white alabastrum(diploid) 197.682
CNS0095593Slightly white alabastrum(diploid) 295.546
CNS0095594Slightly white alabastrum(diploid) 381.711
CNS0095595Whole white alabastrum(diploid) 2100.837
CNS0095596Whole white alabastrum(diploid) 3114.996
CNS0095597Whole white alabastrum(diploid) 488.454
CNS0095598Silvery flower (diploied) 176.889
CNS0095599Silvery flower (diploied) 293.995
CNS0095600Silvery flower (diploied) 3149.608
CNS0095601Golden flower (diploid) 196.861
CNS0095602Golden flower (diploid) 2126.056
CNS0095603Golden flower (diploid) 3123.576
CNS0095604Slightly white alabastrum(tetraploid) 1100.533
CNS0095605Slightly white alabastrum(tetraploid) 293.009
CNS0095606Slightly white alabastrum(tetraploid) 3108.124
CNS0095607Whole white alabastrum(tetraploid) 189.759
CNS0095608Whole white alabastrum(tetraploid) 292.506
CNS0095609Whole white alabastrum(tetraploid) 3122.670
CNS0095610Silvery flower (tetraploid) 1112.862
CNS0095611Silvery flower (tetraploid) 2123.410
CNS0095612Silvery flower (tetraploid) 3145.612
CNS0095613Golden flower (tetraploid) 1142.349
CNS0095614Golden flower (tetraploid) 2116.076
CNS0095615Golden flower (tetraploid) 3172.584
CRA001975CRR073297Stem 190.194
CRR073298Stem 284.929
CRR073299Stem 393.725
CRR073300Leaf 1112.166
CRR073301Leaf 2129.647
CRR073302Leaf 3171.702
CRR073303Juvenile bud 1160.655
CRR073304Juvenile bud 2209.472
CRR073305Juvenile bud 3113.307
CRR073306Third green 1275.631
CRR073307Third green 2197.625
CRR073308Third green 3183.315
CRR073309Second white 1303.351
CRR073310Second white 2191.362
CRR073311Second white 3149.457
CRR073312Silver flowering 1168.950
CRR073313Silver flowering 2183.719
CRR073314Silver flowering 3135.955
CRR073315Gold flowering 146.977
CRR073316Gold flowering 244.986
CRR073317Gold flowering 347.245
CRR073318Tawny withering 143.419
CRR073319Tawny withering 242.865
CRR073320Tawny withering 342.361