Detail information of GWHGAAZE015640


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008437787.11.26095E-30PREDICTED: CCR4-NOT transcription complex subunit 1 [Cucumis melo]
trEMBLtr|A0A0A0L3M1|A0A0A0L3M1_CUCSA5E-31Uncharacterized protein {ECO:0000313|EMBL:KGN56358.1}
TAIR10AT1G02080.25E-18transcription regulators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5153724851538656-
GWHAAZE00000004mRNA5153724851538656-
GWHAAZE00000004exon5153855051538656-
GWHAAZE00000004exon5153822251538356-
GWHAAZE00000004exon5153785451538091-
GWHAAZE00000004exon5153750051537601-
GWHAAZE00000004exon5153724851537301-
GWHAAZE00000004five_prime_UTR5153858051538656-
GWHAAZE00000004CDS5153855051538579-
GWHAAZE00000004CDS5153822251538356-
GWHAAZE00000004CDS5153803851538091-
GWHAAZE00000004three_prime_UTR5153785451538037-
GWHAAZE00000004three_prime_UTR5153750051537601-
GWHAAZE00000004three_prime_UTR5153724851537301-
Transcript Sequence

Network for GWHGAAZE015640

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04054.16Not11649.30E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12604CNOT1, NOT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.751
SRR3591706second leaf19.254
SRR3591707mature leaf17.074
SRR3591708Shoot apex5.056
SRR3591709Stem3.690
SRR3591710White floral bud1.561
SRR3591711White flower0.616
SRR3591712Green floral bud0.600
SRR3591713Yellow flower0.822
SRP173429 SRR8316895Juvenile bud stage 4.834
SRR8316896Juvenile bud stage 4.947
SRR8316897Juvenile bud stage 3.236
SRR8316894Third green stage 2.999
SRR8316900Third green stage 7.585
SRR8316901Third green stage 6.004
SRR8316898Complete white stage 1.493
SRR8316899Complete white stage 8.519
SRR8316903Complete white stage 4.186
SRR8316902Silver flowering stage1.600
SRR8316904Silver flowering stage2.421
SRR8316905Silver flowering stage1.960
SRR8316906Gold flowering stage 3.783
SRR8316907Gold flowering stage 4.308
SRR8316908Gold flowering stage 5.538
SRP132670SRR6706286Control6.110
SRR6706287Light intensity 50%6.880
SRR6706288Light intensity 20%7.586
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.091
CNS0095593Slightly white alabastrum(diploid) 29.081
CNS0095594Slightly white alabastrum(diploid) 35.050
CNS0095595Whole white alabastrum(diploid) 24.518
CNS0095596Whole white alabastrum(diploid) 35.591
CNS0095597Whole white alabastrum(diploid) 44.697
CNS0095598Silvery flower (diploied) 16.804
CNS0095599Silvery flower (diploied) 25.567
CNS0095600Silvery flower (diploied) 33.915
CNS0095601Golden flower (diploid) 14.377
CNS0095602Golden flower (diploid) 23.102
CNS0095603Golden flower (diploid) 34.056
CNS0095604Slightly white alabastrum(tetraploid) 12.072
CNS0095605Slightly white alabastrum(tetraploid) 22.554
CNS0095606Slightly white alabastrum(tetraploid) 33.184
CNS0095607Whole white alabastrum(tetraploid) 10.684
CNS0095608Whole white alabastrum(tetraploid) 21.170
CNS0095609Whole white alabastrum(tetraploid) 31.679
CNS0095610Silvery flower (tetraploid) 11.832
CNS0095611Silvery flower (tetraploid) 21.958
CNS0095612Silvery flower (tetraploid) 31.480
CNS0095613Golden flower (tetraploid) 10.987
CNS0095614Golden flower (tetraploid) 21.206
CNS0095615Golden flower (tetraploid) 30.932
CRA001975CRR073297Stem 110.722
CRR073298Stem 28.430
CRR073299Stem 33.858
CRR073300Leaf 18.494
CRR073301Leaf 211.042
CRR073302Leaf 34.771
CRR073303Juvenile bud 13.755
CRR073304Juvenile bud 20.804
CRR073305Juvenile bud 34.384
CRR073306Third green 11.209
CRR073307Third green 20.680
CRR073308Third green 31.087
CRR073309Second white 10.218
CRR073310Second white 21.119
CRR073311Second white 30.168
CRR073312Silver flowering 10.139
CRR073313Silver flowering 20.084
CRR073314Silver flowering 30.225
CRR073315Gold flowering 10.983
CRR073316Gold flowering 22.810
CRR073317Gold flowering 30.515
CRR073318Tawny withering 15.010
CRR073319Tawny withering 26.445
CRR073320Tawny withering 34.711