Gene detail

Detail information of GWHGAAZE015645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008237315.1	0	PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Prunus mume]
Swissprot	tr\|O22938\|Y2182_ARATH	9E-147	Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 (Precursor)
trEMBL	tr\|K4D6N0\|K4D6N0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g017270.1.1}
TAIR10	AT1G34420.1	0	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	51634300	51637821	+
GWHAAZE00000004	mRNA	51634300	51637821	+
GWHAAZE00000004	exon	51634300	51636787	+
GWHAAZE00000004	exon	51637514	51637821	+
GWHAAZE00000004	CDS	51634300	51636787	+
GWHAAZE00000004	CDS	51637514	51637821	+

Transcript Sequence
>GWHTAAZE015661 ATGGTTTCTTCTCAACTTCCTTCTGCCCAAATTACCACCATGAATAAACTCTATGATCTTTTAAAGAACAGCACATCTTTTCCATGGAATAGTACACAAGACCCAAATCCTTGTTCTTGGAAAGGGGTGGTTTGCAGACCTCCAAACAACTCCTCAATAACCCGGCTTTCTCTCTCCTCAATTTCTCTCAGCAATTCTTCTTTCTTGCCTGTTTTTTGTGAAATTGATAGCTTGGAGGTTCTTGATCTTTCCAATAATCATGTGAGTGAAATTCCAGGTGGGTTTGTTGAAGCTTGTGGTAGGATTAGTGTGTTGAGTGTTTTGAATTTTAGTAGGAATAAATTGGAGGGTTCTTTGCCTAATTTTAGTGGGTTTGGTGTGTTGGAGCATTTGGATTTTAGTCATAATGTGTTGAGTGGTAATCTTGATTTGCAGTTAGATGGGTTGGTTAGGTTAAGAAGCTTGAACCTTAGCAACAACCAATTCAATGGCCATGTTCCTAAAAGCCTAGGGAATTCAACTCTCTTAGAGGAACTTGAGCTTTCCATCAACAATTTTGAGGGCCAAATCCCCGAAGAAATTGTAAATTGTGGGAACTTGACTCTGATTGATCTTAGTGCCAATAAGCTCTCTGGGACAATTCCTCAAAGACTTGGCGAGCTCTACAAACTGTCAACTTTGATTCTATCTTCCAATTCTTTAACTGGTGAAATCCCACAATCCCTCTCAAGTATCAATACTCTGTCGAGATTTGCTGCAAATCAGAATGCATTTACCGGTCTTATTCCTCCTGGGATTACTAGGTTTCTCAAGAATATAGATCTTAGTTATAATAAGTTAAATGGGTCAATCCCATTGGACTTTTTAACGGCGTCGAATTTGCAGTATGTTGATTTGTCTAACAATGAGTTAGATGGTGCTATACCTGAAAATATGTCTCAAAGCTTAATTAGGTTAAGGCTAGGAAGCAATTCATTTAACGGAAGAATCCCATCTTTATACCTTGGAAACCTTCAAAACTTGACCTATTTAGAGCTTGATGGCAATCAATTGAGAGGTTCGATTCCTCCTGAATTGGGTTTGTGCAAGAAATTAGCGCTATTGAATTTAGCTCAAAATGAATTGACTGGTTTTTTGCCACGAGAGTTGGGTAGTCTTAGCAATGTTCAAGTGATGAAGCTACAAATGAACAGCTTGTCCGGTGAAATTCCTGTTGAGATTACTAATTTGACTAGGCTGCAAGGACTGAATATAAGTGGGAATTCATTGAATGGTTCCATTCCATCTTCGATTTCCAATTTGCAGAATCTTGGTAACTTGGACTTACAAAGTAACAATCTTTCTGGACCATTACCCAATACAATAGGGAGCTTAAACTCTCTGCTAGAACTTCAACTCGCAAATAACCGACTTGGCGGGGGTATATTCTCACTCCCAAAATATCTAAAAATTTCCTTGAATCTGAGCAACAACCTTTTTGAAGGATCCATTCCGAGGAGTGTAAGTAGTTTGACAGAATTGGAAGTTTTGGATCTGTCAAATAACCGATTTTCTGGGGAAATCCCTGATTTTCTCACGACGATGACGGGCTTAACCCAATTAGTGCTTGCAAACAACAGTCTTTCTGGCACGATTCCCAAGTTTCCGACCTTTGTAACTGTCGATACGCGCGGTAATAAAGATCTCACCAACTCCACAACGTCGAACACTTCACCCGGCCCCCAGAAGAGGAAGCGAACTGTTGCTATAGGGGTGGTGGTTGGGGCTCTAGCCGGTGTGCTTGCATTAGGCATAGTTGTAGTCATTGCTATGACATTTTCGAGGCGATTCTATAGGGTCAATGATGAGCACGTGGAAATGGGTGAAAGGGGCTCACCTCGGCCTGAAGTGATCGAGGGCGTTTTGTTAACATCAAACAGCATTCACAGATCGAATATTGACTTCTGTACAGCCATGGAAGCCGTAACAAATCATTCTAACGTCTTCTTGAAAACCCGATTTTCAACTTACTACAAAGCCATAATGCCATCAGGCTCGAGATATATTGTCAAGAAACTGAATTGGACCGACAAAATATTTCAATTGGGTAGCCACGAAAAATTCGGGGAAGAGCTCGAGGTCCTAGGGAGGTTGAGTAATTCAAGTGTGATGACTCCACTTGCTTATGTTTTGACCGTTGATCATGCTTATTTGTTCTATGAGTTTGCCGAGAAGGGCACGCTTTTCGATGTTTTGCATGGTGAAGGTAACAGTTTGGATTGGTCGAGCCGTTACAGTATAGCGATTGGAGTGGCTCAGGGCTTGGCATTTCTTCACGGGTCCACCTCAGGTCCGATTCTTTTGCTTGATCTTTCAAGTAAGAGCATCTTGCTTAAGTCTTTAAAGGAGCCTCAAGTTGGTGATATTGAGCTTTGTAAGGTGATTGATCCTTCAAAAAGTACAGGAAGTCTTTCTGCTGTTGCTGGATCTGTTGGCTACATTCCTCCAGAGTACGCATACACGATGAGGGTGACTATGGCTGGCAACGTATATAGCTTTGGGGTCATTTTATTGGAACTGGTGACTGGAAAAGCAGCGGTTAGCGAGGGGATCGAGTTAGCCAAATGGGTGTTGAGCAAGTCCACACGGAAGGGCAATTGGGACCACATTCTTGATTATAGTGTGAGCCGAGGATCAGTGTCGGTTAGGACCCAAATGCTATCGGTCCTGAGGATCGCTCTGGCCTGTGTTAATGTCTCACCGGAAGCAAGGCCGAAGATGAAGAGCGTGTTGAGGATGCTGATAAATGCGAGGTAA

Network for GWHGAAZE015645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	151	171	1.8
PF00560.34	LRR_1	507	524	1.9
PF07714.18	PK_Tyr_Ser-Thr	694	926	1.40E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.749
	SRR3591706	second leaf	0.699
	SRR3591707	mature leaf	1.046
	SRR3591708	Shoot apex	0.609
	SRR3591709	Stem	1.620
	SRR3591710	White floral bud	0.904
	SRR3591711	White flower	1.807
	SRR3591712	Green floral bud	0.409
	SRR3591713	Yellow flower	0.857
SRP173429	SRR8316895	Juvenile bud stage	14.714
	SRR8316896	Juvenile bud stage	9.015
	SRR8316897	Juvenile bud stage	1.678
	SRR8316894	Third green stage	3.238
	SRR8316900	Third green stage	2.591
	SRR8316901	Third green stage	3.193
	SRR8316898	Complete white stage	0.982
	SRR8316899	Complete white stage	9.190
	SRR8316903	Complete white stage	2.045
	SRR8316902	Silver flowering stage	2.032
	SRR8316904	Silver flowering stage	3.031
	SRR8316905	Silver flowering stage	1.370
	SRR8316906	Gold flowering stage	5.300
	SRR8316907	Gold flowering stage	5.150
	SRR8316908	Gold flowering stage	2.365
SRP132670	SRR6706286	Control	3.059
	SRR6706287	Light intensity 50%	3.247
	SRR6706288	Light intensity 20%	2.506
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.846
	CNS0095593	Slightly white alabastrum(diploid) 2	8.850
	CNS0095594	Slightly white alabastrum(diploid) 3	9.657
	CNS0095595	Whole white alabastrum(diploid) 2	7.469
	CNS0095596	Whole white alabastrum(diploid) 3	1.498
	CNS0095597	Whole white alabastrum(diploid) 4	4.972
	CNS0095598	Silvery flower (diploied) 1	26.973
	CNS0095599	Silvery flower (diploied) 2	17.690
	CNS0095600	Silvery flower (diploied) 3	10.059
	CNS0095601	Golden flower (diploid) 1	24.964
	CNS0095602	Golden flower (diploid) 2	24.170
	CNS0095603	Golden flower (diploid) 3	23.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.109
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.381
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.017
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.026
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.148
	CNS0095610	Silvery flower (tetraploid) 1	0.448
	CNS0095611	Silvery flower (tetraploid) 2	0.408
	CNS0095612	Silvery flower (tetraploid) 3	0.579
	CNS0095613	Golden flower (tetraploid) 1	0.204
	CNS0095614	Golden flower (tetraploid) 2	0.287
	CNS0095615	Golden flower (tetraploid) 3	0.292
CRA001975	CRR073297	Stem 1	9.170
	CRR073298	Stem 2	7.988
	CRR073299	Stem 3	7.083
	CRR073300	Leaf 1	4.569
	CRR073301	Leaf 2	6.901
	CRR073302	Leaf 3	4.090
	CRR073303	Juvenile bud 1	2.824
	CRR073304	Juvenile bud 2	2.505
	CRR073305	Juvenile bud 3	5.098
	CRR073306	Third green 1	2.655
	CRR073307	Third green 2	2.246
	CRR073308	Third green 3	2.941
	CRR073309	Second white 1	3.539
	CRR073310	Second white 2	3.343
	CRR073311	Second white 3	3.001
	CRR073312	Silver flowering 1	5.248
	CRR073313	Silver flowering 2	5.754
	CRR073314	Silver flowering 3	3.970
	CRR073315	Gold flowering 1	11.730
	CRR073316	Gold flowering 2	19.691
	CRR073317	Gold flowering 3	14.407
	CRR073318	Tawny withering 1	12.490
	CRR073319	Tawny withering 2	21.880
	CRR073320	Tawny withering 3	12.403