Detail information of GWHGAAZE015702


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACJ11758.19.79803E-19arabinose kinase [Gossypium hirsutum]
Swissprottr|O23461|ARAK_ARATH1E-18L-arabinokinase
trEMBLtr|D2D338|D2D338_GOSHI4E-19Arabinose kinase {ECO:0000313|EMBL:ACJ11758.1} (Fragment)
TAIR10AT4G16130.15E-17arabinose kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5391320053914546+
GWHAAZE00000004mRNA5391320053914546+
GWHAAZE00000004exon5391320053913204+
GWHAAZE00000004exon5391328253913335+
GWHAAZE00000004exon5391357553913742+
GWHAAZE00000004exon5391430353914546+
GWHAAZE00000004CDS5391320053913204+
GWHAAZE00000004CDS5391328253913335+
GWHAAZE00000004CDS5391357553913742+
GWHAAZE00000004CDS5391430353914546+
Transcript Sequence

Network for GWHGAAZE015702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12446E2.7.1.46 Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.141
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.153
SRR3591709Stem0.104
SRR3591710White floral bud4.096
SRR3591711White flower1.287
SRR3591712Green floral bud3.231
SRR3591713Yellow flower0.471
SRP173429 SRR8316895Juvenile bud stage 0.779
SRR8316896Juvenile bud stage 1.589
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.329
SRR8316900Third green stage 2.237
SRR8316901Third green stage 1.887
SRR8316898Complete white stage 0.261
SRR8316899Complete white stage 1.869
SRR8316903Complete white stage 0.918
SRR8316902Silver flowering stage0.414
SRR8316904Silver flowering stage0.860
SRR8316905Silver flowering stage0.175
SRR8316906Gold flowering stage 0.899
SRR8316907Gold flowering stage 0.079
SRR8316908Gold flowering stage 0.222
SRP132670SRR6706286Control1.158
SRR6706287Light intensity 50%1.778
SRR6706288Light intensity 20%1.411
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.149
CNS0095593Slightly white alabastrum(diploid) 21.343
CNS0095594Slightly white alabastrum(diploid) 32.251
CNS0095595Whole white alabastrum(diploid) 21.017
CNS0095596Whole white alabastrum(diploid) 31.154
CNS0095597Whole white alabastrum(diploid) 41.049
CNS0095598Silvery flower (diploied) 11.826
CNS0095599Silvery flower (diploied) 20.695
CNS0095600Silvery flower (diploied) 30.662
CNS0095601Golden flower (diploid) 10.974
CNS0095602Golden flower (diploid) 20.760
CNS0095603Golden flower (diploid) 31.127
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 12.345
CRR073298Stem 22.098
CRR073299Stem 30.804
CRR073300Leaf 13.232
CRR073301Leaf 21.847
CRR073302Leaf 30.601
CRR073303Juvenile bud 10.376
CRR073304Juvenile bud 20.109
CRR073305Juvenile bud 30.474
CRR073306Third green 10.088
CRR073307Third green 20.023
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.875
CRR073316Gold flowering 21.067
CRR073317Gold flowering 30.051
CRR073318Tawny withering 10.765
CRR073319Tawny withering 20.181
CRR073320Tawny withering 30.680