Gene detail

Detail information of GWHGAAZE015713

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271836.1	9.79714E-93	PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera]
trEMBL	tr\|B9I9V1\|B9I9V1_POPTR	5E-93	Uncharacterized protein {ECO:0000313\|EMBL:EEE99342.2}
TAIR10	AT5G07900.1	1E-66	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	54234446	54235348	-
GWHAAZE00000004	mRNA	54234446	54235348	-
GWHAAZE00000004	exon	54234446	54235348	-
GWHAAZE00000004	CDS	54234446	54235348	-

Transcript Sequence
>GWHTAAZE015729 ATGGTTAGAATACGCCCCAGGATTCTTTTTTCAGATCCCAAGAAAAAACTGATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAAGAACCGATATGCCAAGAATTCTCTCGTTGAATCCGTCTTTGTTAGGGTGGAGTTTAGAGAATCAGTTGATTCCTTGTCATAACTTCCTAAAAAATGTACTAATTCTTGAAAAAAATGTACTAATTCTTGATGAAAATGTTGTTAAGATGTTAAAGCAGAATTCGAGAATACTTCTTCATGATTTTGAGAAGAATATTGGTCCGAATATTTGTTCATTGAGTGGGGTTGGGGTTCCTAAATCGCTAATTTCGTTCATGTTGTTTCAGTTTCCGTGTGTTGCTTATCAAAATCACGAGAAATTTAAGAAAGCTGTAGAGGAAGTTATTGAAATGGGATTTAATCCGTTGAGGACTATGTTTGTTCAAGCAGTTCAAGTGATTTGTGAACTGACTAAAATGACATGGGATCGTAAGTGGGCGGCCTTTAGGAGGTGGGGTTTGTCCGATGACAAGATTCTATTGTCATTTAGATCGCATCCGTTGTGTATGAATTTGTCCGAGGAGAAAATTACAAGGGGAATGGATTTTCTTGTGAACAAAATGGGTTGGGAGGCTGTGAAAGTTGCTAAGTGTCCAGCCGTACTTTTTTACAATTTGGAAAATAGGATCATTCCGAGGTGTAGAGTGATAAAAGTTTTGATATCGGAGGGAATTTTGAAGAAAGATACGAGCTTGGGTACCTTTTTGATGCCTTTGGAAAATCAATTCTTGGAAAGGTTTGTGAGCAACTATGAAGACAAAGTTCCTGAGCTGCTAGATGTTTATCGAGGGAAGACAGTTCGTTTGAAAACAGGACTTCGATCCAAGGATTGA

Network for GWHGAAZE015713

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	2	63	4.50E-07
PF02536.15	mTERF	60	266	2.20E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.967
	SRR3591706	second leaf	0.483
	SRR3591707	mature leaf	0.559
	SRR3591708	Shoot apex	1.535
	SRR3591709	Stem	0.407
	SRR3591710	White floral bud	0.835
	SRR3591711	White flower	1.008
	SRR3591712	Green floral bud	0.871
	SRR3591713	Yellow flower	0.564
SRP173429	SRR8316895	Juvenile bud stage	2.678
	SRR8316896	Juvenile bud stage	1.520
	SRR8316897	Juvenile bud stage	0.290
	SRR8316894	Third green stage	0.878
	SRR8316900	Third green stage	3.565
	SRR8316901	Third green stage	2.122
	SRR8316898	Complete white stage	0.496
	SRR8316899	Complete white stage	3.917
	SRR8316903	Complete white stage	0.972
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.407
	SRR8316905	Silver flowering stage	0.284
	SRR8316906	Gold flowering stage	0.949
	SRR8316907	Gold flowering stage	1.071
	SRR8316908	Gold flowering stage	0.845
SRP132670	SRR6706286	Control	2.532
	SRR6706287	Light intensity 50%	2.473
	SRR6706288	Light intensity 20%	2.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.672
	CNS0095593	Slightly white alabastrum(diploid) 2	2.634
	CNS0095594	Slightly white alabastrum(diploid) 3	1.656
	CNS0095595	Whole white alabastrum(diploid) 2	2.109
	CNS0095596	Whole white alabastrum(diploid) 3	2.584
	CNS0095597	Whole white alabastrum(diploid) 4	2.143
	CNS0095598	Silvery flower (diploied) 1	2.616
	CNS0095599	Silvery flower (diploied) 2	0.735
	CNS0095600	Silvery flower (diploied) 3	0.863
	CNS0095601	Golden flower (diploid) 1	1.932
	CNS0095602	Golden flower (diploid) 2	1.000
	CNS0095603	Golden flower (diploid) 3	1.017
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.736
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.108
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.284
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.499
	CNS0095610	Silvery flower (tetraploid) 1	0.187
	CNS0095611	Silvery flower (tetraploid) 2	0.217
	CNS0095612	Silvery flower (tetraploid) 3	0.129
	CNS0095613	Golden flower (tetraploid) 1	0.063
	CNS0095614	Golden flower (tetraploid) 2	0.240
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.664
	CRR073298	Stem 2	1.217
	CRR073299	Stem 3	0.209
	CRR073300	Leaf 1	1.355
	CRR073301	Leaf 2	0.992
	CRR073302	Leaf 3	0.983
	CRR073303	Juvenile bud 1	0.943
	CRR073304	Juvenile bud 2	1.226
	CRR073305	Juvenile bud 3	1.425
	CRR073306	Third green 1	0.109
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.176
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.052
	CRR073313	Silver flowering 2	0.041
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.257
	CRR073316	Gold flowering 2	0.320
	CRR073317	Gold flowering 3	0.103
	CRR073318	Tawny withering 1	1.296
	CRR073319	Tawny withering 2	0.624
	CRR073320	Tawny withering 3	1.022