Detail information of GWHGAAZE015728


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009608885.10PREDICTED: probable U3 small nucleolar RNA-associated protein 7 isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q9AV81|PRP19_ORYSJ6E-12Pre-mRNA-processing factor 19 {ECO:0000305}
trEMBLtr|D7UBS0|D7UBS0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI40185.3}
TAIR10AT3G10530.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5481558654821990-
GWHAAZE00000004mRNA5481558654821990-
GWHAAZE00000004exon5481558654816620-
GWHAAZE00000004exon5481675354816801-
GWHAAZE00000004exon5481943854819505-
GWHAAZE00000004exon5482060754820725-
GWHAAZE00000004exon5482119354821325-
GWHAAZE00000004exon5482171954821808-
GWHAAZE00000004exon5482190154821990-
GWHAAZE00000004CDS5482190154821990-
GWHAAZE00000004CDS5482171954821808-
GWHAAZE00000004CDS5482119354821325-
GWHAAZE00000004CDS5482060754820725-
GWHAAZE00000004CDS5481943854819505-
GWHAAZE00000004CDS5481675354816801-
GWHAAZE00000004CDS5481558654816620-
Transcript Sequence

Network for GWHGAAZE015728

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402662971.20E-06
PF08149.12BING4CT3454232.70E-33
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.275
SRR3591706second leaf1.979
SRR3591707mature leaf2.023
SRR3591708Shoot apex4.140
SRR3591709Stem2.048
SRR3591710White floral bud7.608
SRR3591711White flower9.989
SRR3591712Green floral bud11.723
SRR3591713Yellow flower8.355
SRP173429 SRR8316895Juvenile bud stage 10.156
SRR8316896Juvenile bud stage 13.169
SRR8316897Juvenile bud stage 8.465
SRR8316894Third green stage 5.464
SRR8316900Third green stage 18.755
SRR8316901Third green stage 17.531
SRR8316898Complete white stage 4.854
SRR8316899Complete white stage 21.401
SRR8316903Complete white stage 8.057
SRR8316902Silver flowering stage4.888
SRR8316904Silver flowering stage6.874
SRR8316905Silver flowering stage2.732
SRR8316906Gold flowering stage 12.696
SRR8316907Gold flowering stage 11.920
SRR8316908Gold flowering stage 14.407
SRP132670SRR6706286Control17.617
SRR6706287Light intensity 50%17.888
SRR6706288Light intensity 20%17.864
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.340
CNS0095593Slightly white alabastrum(diploid) 213.750
CNS0095594Slightly white alabastrum(diploid) 313.154
CNS0095595Whole white alabastrum(diploid) 213.046
CNS0095596Whole white alabastrum(diploid) 313.692
CNS0095597Whole white alabastrum(diploid) 411.782
CNS0095598Silvery flower (diploied) 112.443
CNS0095599Silvery flower (diploied) 29.133
CNS0095600Silvery flower (diploied) 312.805
CNS0095601Golden flower (diploid) 111.575
CNS0095602Golden flower (diploid) 212.723
CNS0095603Golden flower (diploid) 311.808
CNS0095604Slightly white alabastrum(tetraploid) 113.679
CNS0095605Slightly white alabastrum(tetraploid) 213.886
CNS0095606Slightly white alabastrum(tetraploid) 317.847
CNS0095607Whole white alabastrum(tetraploid) 18.248
CNS0095608Whole white alabastrum(tetraploid) 211.645
CNS0095609Whole white alabastrum(tetraploid) 314.475
CNS0095610Silvery flower (tetraploid) 112.812
CNS0095611Silvery flower (tetraploid) 214.336
CNS0095612Silvery flower (tetraploid) 39.251
CNS0095613Golden flower (tetraploid) 17.591
CNS0095614Golden flower (tetraploid) 212.989
CNS0095615Golden flower (tetraploid) 310.151
CRA001975CRR073297Stem 116.625
CRR073298Stem 215.167
CRR073299Stem 316.494
CRR073300Leaf 118.745
CRR073301Leaf 214.538
CRR073302Leaf 312.403
CRR073303Juvenile bud 114.568
CRR073304Juvenile bud 29.839
CRR073305Juvenile bud 317.921
CRR073306Third green 12.790
CRR073307Third green 22.849
CRR073308Third green 34.024
CRR073309Second white 14.431
CRR073310Second white 26.544
CRR073311Second white 33.505
CRR073312Silver flowering 14.774
CRR073313Silver flowering 26.046
CRR073314Silver flowering 37.158
CRR073315Gold flowering 13.713
CRR073316Gold flowering 26.883
CRR073317Gold flowering 36.814
CRR073318Tawny withering 18.664
CRR073319Tawny withering 27.344
CRR073320Tawny withering 39.016