Gene detail

Detail information of GWHGAAZE015737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080998.1	2.8091E-159	PREDICTED: uncharacterized protein LOC105164123 [Sesamum indicum]
trEMBL	tr\|A0A022QTB4\|A0A022QTB4_ERYGU	2E-151	Uncharacterized protein {ECO:0000313\|EMBL:EYU29730.1}
TAIR10	AT4G20330.1	5E-85	Transcription initiation factor TFIIE, beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	55057644	55061255	-
GWHAAZE00000004	mRNA	55057644	55061255	-
GWHAAZE00000004	exon	55057644	55058013	-
GWHAAZE00000004	exon	55059763	55059959	-
GWHAAZE00000004	exon	55060084	55060215	-
GWHAAZE00000004	exon	55060983	55061255	-
GWHAAZE00000004	CDS	55060983	55061255	-
GWHAAZE00000004	CDS	55060084	55060215	-
GWHAAZE00000004	CDS	55059763	55059959	-
GWHAAZE00000004	CDS	55057644	55058013	-

Transcript Sequence
>GWHTAAZE015753 ATGGCATCATTGCAAGAAAGTTTGAATAGATTCAAGAAGCAGCAAGAGAAGTGTCAATCAACCCTAACCAGCATTGCAGCAAAATCAAGTTCAAAGTCAGCGGCCACCTCTAAAGGCACGCCCTATATTGCGCCTCCTGCAGTCAGTGCTGCCAAGTCTCTGGCACCTGCAATTAAATTTTCAAATGATACAGAGAGGCTTCAACACATCAACAGTATAAGGAAAGCCCCTGTAGGCGCTCAGATCAAACGTGTTATTGACTTGCTCTTTGAGACAAGGCAAGCCTTTACGCCAGAGCAAATAAATGAATCATGCCATGTTGATGTGAATGGGAACAAGGCGGTCTTTGACAGTTTAAGAAACAACTTGAAAGTAAGCTATGACGGGAAGCGCTTTGCCTACAAGTCCAAGCATGCTCTAAAAGACAAGGATCAACTTCTTGTCTTAATACGGAAATTTCCCGAAGGTATTGCTGTCATTGATCTCAAGGATGCATACCCCACCGTCATGGAGGACTTGCAGGTATTTTTTTTTGTTTATTTTTTCTTTTTATCATTTTCAGTTTTCGTTCTATTTCAATATGGGCTATGTACCGGAAAAAGATTTTACCCCCACCCCCAGTCTTTGAAATCCACAGGTAAAATCTGGCTGCTTTCGAACTTTGATTCGCAGGAGGACATAGCCTACCCAAATGACCCCCGTGTACCAATCAAGGTTGATGACGACCTGAAACACCTATTCCGAGGGATCGAATTACCCCGCGATATGATCGACATAGAGAAGGATCTACAGAAGAACGGGATGAAACCCGCCACAAATACGGCAAAGCGGAGAGCCATGGCACAGGTCCTTGGGGCTGGACCCAAGCCCAAGCCCAAGAAGAAGAAGCACGAAATCAGCAAGAGGACCAAGCTTACCAACGCTCACTTGCCTGAGCTTTTCCAGAACCTCAATGTTCCCGGTTCACGATGA

Network for GWHGAAZE015737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0268

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02186.16	TFIIE_beta	80	138	1.40E-07
PF18121.2	TFA2_Winged_2	141	174	2.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03137	TFIIE2, GTF2E2, TFA2	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.668
	SRR3591706	second leaf	17.038
	SRR3591707	mature leaf	17.734
	SRR3591708	Shoot apex	26.886
	SRR3591709	Stem	44.820
	SRR3591710	White floral bud	51.558
	SRR3591711	White flower	52.387
	SRR3591712	Green floral bud	42.550
	SRR3591713	Yellow flower	43.026
SRP173429	SRR8316895	Juvenile bud stage	23.166
	SRR8316896	Juvenile bud stage	30.436
	SRR8316897	Juvenile bud stage	13.972
	SRR8316894	Third green stage	13.243
	SRR8316900	Third green stage	36.029
	SRR8316901	Third green stage	37.408
	SRR8316898	Complete white stage	25.299
	SRR8316899	Complete white stage	58.047
	SRR8316903	Complete white stage	32.598
	SRR8316902	Silver flowering stage	20.104
	SRR8316904	Silver flowering stage	28.833
	SRR8316905	Silver flowering stage	13.650
	SRR8316906	Gold flowering stage	49.447
	SRR8316907	Gold flowering stage	51.040
	SRR8316908	Gold flowering stage	51.355
SRP132670	SRR6706286	Control	51.788
	SRR6706287	Light intensity 50%	47.753
	SRR6706288	Light intensity 20%	49.019
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.257
	CNS0095593	Slightly white alabastrum(diploid) 2	25.855
	CNS0095594	Slightly white alabastrum(diploid) 3	20.779
	CNS0095595	Whole white alabastrum(diploid) 2	23.953
	CNS0095596	Whole white alabastrum(diploid) 3	35.063
	CNS0095597	Whole white alabastrum(diploid) 4	29.317
	CNS0095598	Silvery flower (diploied) 1	23.702
	CNS0095599	Silvery flower (diploied) 2	24.240
	CNS0095600	Silvery flower (diploied) 3	47.207
	CNS0095601	Golden flower (diploid) 1	22.797
	CNS0095602	Golden flower (diploid) 2	43.690
	CNS0095603	Golden flower (diploid) 3	42.355
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.047
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.374
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.168
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.328
	CNS0095610	Silvery flower (tetraploid) 1	52.957
	CNS0095611	Silvery flower (tetraploid) 2	56.375
	CNS0095612	Silvery flower (tetraploid) 3	63.759
	CNS0095613	Golden flower (tetraploid) 1	39.757
	CNS0095614	Golden flower (tetraploid) 2	48.416
	CNS0095615	Golden flower (tetraploid) 3	63.867
CRA001975	CRR073297	Stem 1	37.969
	CRR073298	Stem 2	37.701
	CRR073299	Stem 3	37.410
	CRR073300	Leaf 1	42.440
	CRR073301	Leaf 2	43.650
	CRR073302	Leaf 3	44.154
	CRR073303	Juvenile bud 1	45.360
	CRR073304	Juvenile bud 2	40.557
	CRR073305	Juvenile bud 3	46.371
	CRR073306	Third green 1	47.187
	CRR073307	Third green 2	60.448
	CRR073308	Third green 3	48.893
	CRR073309	Second white 1	60.656
	CRR073310	Second white 2	56.141
	CRR073311	Second white 3	47.434
	CRR073312	Silver flowering 1	47.795
	CRR073313	Silver flowering 2	47.936
	CRR073314	Silver flowering 3	49.025
	CRR073315	Gold flowering 1	29.605
	CRR073316	Gold flowering 2	29.457
	CRR073317	Gold flowering 3	25.140
	CRR073318	Tawny withering 1	47.379
	CRR073319	Tawny withering 2	36.435
	CRR073320	Tawny withering 3	40.972