Gene detail

Detail information of GWHGAAZE015749

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP20322.1	3.00326E-79	unnamed protein product [Coffea canephora]
Swissprot	tr\|O49545\|BAME1_ARATH	4E-55	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor)
trEMBL	tr\|A0A068VI92\|A0A068VI92_COFCA	1E-79	Coffea canephora DH200=94 genomic scaffold, scaffold_1096 {ECO:0000313\|EMBL:CDP20322.1}
TAIR10	AT5G65700.2	4E-50	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	55470142	55477747	+
GWHAAZE00000004	mRNA	55470142	55477747	+
GWHAAZE00000004	exon	55470142	55470505	+
GWHAAZE00000004	exon	55471913	55471984	+
GWHAAZE00000004	exon	55472069	55472278	+
GWHAAZE00000004	exon	55477368	55477747	+
GWHAAZE00000004	CDS	55470142	55470505	+
GWHAAZE00000004	CDS	55471913	55471984	+
GWHAAZE00000004	CDS	55472069	55472278	+
GWHAAZE00000004	CDS	55477368	55477747	+

Transcript Sequence
>GWHTAAZE015765 TCATTGTTGTTGTTTCTAAATGGTTTCACATTTTGCTTATATACCAAGGATAAATTTGCACTTCTGGCAATCAAAACCAATATCATTGACCATTCAGGCATCTTATCAAACAGTTGGTCTGCAATTTCGAACACCCCAATCTGCACCTGGATTGGTGTTTCCTGTGATTTAAGCAACCAATCAGTCACTGCCTTGAATCTGTCCAGAATGGGTCTCACCGGCACTGTCAATCCGGCTATCGGAAACCTCTCGTACCTCACTTTACTTGACATCAGTTACAATAACTTCTCAGGTTCTGTGCCTGAAGAGTTATCTCATTTGCATCATCTTCAATACTTGCGTTTATCCAACAACAGTTTCACAGGTACAATCTCAGCTTCGTTGGGCAATTTGACAAAGCTTGAGACATTGAATTTACATTCCAATCAGCTTACAGTGGATATCTGTAGTCATTATGTTCTGAAACTCGAAACAATTTATCTGTCCTTGAATCATTTCGAGGGGAAAATTCCGCCGAGTTTATTCAAATGCAAGGAGCTTCAACATCTGGCATTGTCAGTGAATGAATTTAGTGGCAGCATATCCGTTGAAATTGGTAACTTGACTATGCTCAAGGACTTATGGCTTGGCTATAACAATTTGGAAGGTGAAATTCCAGTGGAGATTGGTAATCTCAAACTTTTGGAGATATTGGACATACGAAATAGCTCTCTAACAGGACCTATTCCTAATGTCATCTTTAACATGTCCTCTTTGAAAATAATCAATCTCGGAGAAAATAAGCTGACTGGAAGCTTCCCAATCAACATTCATTATAATCTCCCTGTTCTTGAAGAGCTCTATCTTTATAGAAATCAGCTTAAGGGTCAGATTCCATTGTGCTTATTTGATTGCAAAGGACTTCGAGTTATATCATTGTTCGAAAATAAATTCACAGGGAGCATACCTAAGCAAGTTGGGAACCTTACATTACTCAAAGAGCTATATCTTTATGATAACAATTTCACAGGTACCTCCCAAACCTAA

Network for GWHGAAZE015749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	16	56	3.70E-08
PF13855.7	LRR_8	61	119	4.60E-08
PF00560.34	LRR_1	155	177	1.9
PF13855.7	LRR_8	228	287	1.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.172
	SRR3591706	second leaf	3.904
	SRR3591707	mature leaf	9.922
	SRR3591708	Shoot apex	0.439
	SRR3591709	Stem	0.393
	SRR3591710	White floral bud	0.051
	SRR3591711	White flower	0.036
	SRR3591712	Green floral bud	0.062
	SRR3591713	Yellow flower	0.086
SRP173429	SRR8316895	Juvenile bud stage	0.252
	SRR8316896	Juvenile bud stage	0.276
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.379
	SRR8316901	Third green stage	0.099
	SRR8316898	Complete white stage	0.057
	SRR8316899	Complete white stage	0.140
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.282
	SRR6706287	Light intensity 50%	0.330
	SRR6706288	Light intensity 20%	0.162
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.182
	CNS0095594	Slightly white alabastrum(diploid) 3	0.331
	CNS0095595	Whole white alabastrum(diploid) 2	0.019
	CNS0095596	Whole white alabastrum(diploid) 3	0.302
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.349
	CNS0095599	Silvery flower (diploied) 2	0.216
	CNS0095600	Silvery flower (diploied) 3	0.057
	CNS0095601	Golden flower (diploid) 1	0.233
	CNS0095602	Golden flower (diploid) 2	0.189
	CNS0095603	Golden flower (diploid) 3	0.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.141
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.043
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.352
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.074
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.778
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.134
	CNS0095613	Golden flower (tetraploid) 1	0.063
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.053
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.122
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.949
	CRR073316	Gold flowering 2	10.830
	CRR073317	Gold flowering 3	4.327
	CRR073318	Tawny withering 1	1.548
	CRR073319	Tawny withering 2	0.499
	CRR073320	Tawny withering 3	0.207