Gene detail

Detail information of GWHGAAZE015787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	1.2682E-119	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	1E-63	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|V4UCR1\|V4UCR1_9ROSI	2E-103	Uncharacterized protein {ECO:0000313\|EMBL:ESR61960.1}
TAIR10	AT3G47570.1	5E-51	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	57306439	57320143	+
GWHAAZE00000004	mRNA	57306439	57320143	+
GWHAAZE00000004	exon	57306439	57306853	+
GWHAAZE00000004	exon	57308227	57308592	+
GWHAAZE00000004	exon	57314528	57314860	+
GWHAAZE00000004	exon	57319806	57320143	+
GWHAAZE00000004	CDS	57306439	57306853	+
GWHAAZE00000004	CDS	57308227	57308592	+
GWHAAZE00000004	CDS	57314528	57314860	+
GWHAAZE00000004	CDS	57319806	57320143	+

Transcript Sequence
>GWHTAAZE015803 ATGAGTCCCCAATCTCTCTCTCACATGGCGAGAAATACTTTTATTTTTTATGCTCTGCTTTTGTTGTTAAGTTCTTTGACATTTTGCTTGTCCACTAATGATAAATTTGCACTTCTGGCGATCAAAACTAATATCATAGACAAATCAGGCGTTTTATCAAATAACTGGTCTGCAACTTCCAATGCCTCAATCTGCAGTTGGATTGGTGTGTCATGTGATTTTAACTCCCAAAGGGTCACTGCCTTGAATCTTTCCGGCTTTGATCTCGCCGAAACTGTTGCTCCGGTCATCGGAAAGCTCTTGTTCCTCACTTCACTTGATATTAGTTACAATAATTTCTCTGGTTCTGTGCTTAAAGAGTTATCACATTTGCATCATCTTCAACACTTGCTTTTATTCAATAATAGCTTCACAGGTACAATCCCAACTTCTTTAAGCAACAATACAAAGCTTGAGACACTAAATTTAAGGTCCAATCAGCTTACTGGTTTTGTACCTGATGAAATTTTCAACATTTCTTCATTGAGAGTATTGGATCTCGCTGTTAATGACTTTTATGGTAGTCTTCCGGAGGATATTTGTAGTTGTTATGTTCCTAAACTTGAAAGAATTTACCTCTTCATGAATCGTTTCGAGGGGAAAATTCCACCGAGTTTATTCAAATGCGGGCAACTTCAGGATCTGTCATTGTCATTCAATGAATTTAGTGGCAGCATACCCACTGAAATTGGCAACTTGACTATGCTCAAGCACTTACATCTTGGCTTTAACAACTTGGAAGGTGGAATTCCAGCGGAGATAGGTAATCTTAAACTCCTGGAGAGTTTAACCATACCAAGTAGCTCTATAATAGGACCTATTCCTAATTTTATCTTTAACATGTCGTCTTTGAAATTGATCAATTTTCAAGAAAATAACTTGATTGGAACCCTCCCAATGGGCATTAATTTTGACCTCCCTGTTCTTGAAAAGCTCTATCTCGATGAACATCAACTTACGGGTCATATTCCATCGTGCTTATGGGATTGCAGAGGACTTCAAATCATTTCATTGCCTGAAAATAAATTCACAGGAAGCATACCTAAGAAAGTTGGGAACCTTACATTACTCGAAGGCCTTATACCTTTCGAAATCTTCAATATCTCAACAATCATTGATATTTCTTTGGATTGGAATTACTTCTCGTGCCATCTTCCATTGAGCATGGGGCTTTGGATTCCCAATCTTGAAAGAATTACTCTAGGCAACAATAGGCTCAGTGGATCAATCCCAAGCTTTATCTCAAATGCGTCTAAGCTTACCCTGCTAGCGATGGGTGGCAACTCATTCACTGGCTTTATACCCAACACACTCGGTAGTTTAACAGACTTGCGAGGGCTCTATATTGGAGAGAATAATTTGACCGGGGAAGTTTCCACTCTAGGAACTGAGATTCTTCAATTCCTTGACTAA

Network for GWHGAAZE015787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	33	73	1.10E-07
PF13855.7	LRR_8	134	184	6.20E-07
PF00560.34	LRR_1	249	270	0.57
PF13855.7	LRR_8	407	467	6.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.116
	SRR3591712	Green floral bud	0.128
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.190
	SRR8316896	Juvenile bud stage	0.331
	SRR8316897	Juvenile bud stage	0.143
	SRR8316894	Third green stage	0.150
	SRR8316900	Third green stage	0.132
	SRR8316901	Third green stage	0.355
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.071
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.228
	SRR6706287	Light intensity 50%	0.130
	SRR6706288	Light intensity 20%	0.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.069
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.029
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.323
	CNS0095599	Silvery flower (diploied) 2	0.176
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.081
	CNS0095603	Golden flower (diploid) 3	0.172
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.135
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.060
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.156
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.407
	CRR073298	Stem 2	0.323
	CRR073299	Stem 3	0.029
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.279
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.052
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.125
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.199
	CRR073316	Gold flowering 2	0.394
	CRR073317	Gold flowering 3	0.188
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.020