Detail information of GWHGAAZE015801


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009608885.10PREDICTED: probable U3 small nucleolar RNA-associated protein 7 isoform X1 [Nicotiana tomentosiformis]
Swissprottr|Q9AV81|PRP19_ORYSJ3E-13Pre-mRNA-processing factor 19 {ECO:0000305}
trEMBLtr|D7UBS0|D7UBS0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI40185.3}
TAIR10AT3G10530.10Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5767681857685445-
GWHAAZE00000004mRNA5767681857685445-
GWHAAZE00000004exon5768535657685445-
GWHAAZE00000004exon5768517657685265-
GWHAAZE00000004exon5768463557684767-
GWHAAZE00000004exon5768402757684145-
GWHAAZE00000004exon5768290957682976-
GWHAAZE00000004exon5767798557678033-
GWHAAZE00000004exon5767681857677852-
GWHAAZE00000004CDS5768535657685445-
GWHAAZE00000004CDS5768517657685265-
GWHAAZE00000004CDS5768463557684767-
GWHAAZE00000004CDS5768402757684145-
GWHAAZE00000004CDS5768290957682976-
GWHAAZE00000004CDS5767798557678033-
GWHAAZE00000004CDS5767681857677852-
Transcript Sequence

Network for GWHGAAZE015801

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402662971.20E-06
PF08149.12BING4CT3454232.70E-33
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.448
SRR3591706second leaf15.080
SRR3591707mature leaf14.848
SRR3591708Shoot apex24.565
SRR3591709Stem16.373
SRR3591710White floral bud10.859
SRR3591711White flower11.518
SRR3591712Green floral bud18.258
SRR3591713Yellow flower8.573
SRP173429 SRR8316895Juvenile bud stage 7.744
SRR8316896Juvenile bud stage 11.103
SRR8316897Juvenile bud stage 1.924
SRR8316894Third green stage 4.864
SRR8316900Third green stage 14.214
SRR8316901Third green stage 14.332
SRR8316898Complete white stage 5.188
SRR8316899Complete white stage 15.669
SRR8316903Complete white stage 6.678
SRR8316902Silver flowering stage3.543
SRR8316904Silver flowering stage5.287
SRR8316905Silver flowering stage2.567
SRR8316906Gold flowering stage 8.009
SRR8316907Gold flowering stage 7.248
SRR8316908Gold flowering stage 5.772
SRP132670SRR6706286Control12.593
SRR6706287Light intensity 50%13.088
SRR6706288Light intensity 20%13.581
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.485
CNS0095593Slightly white alabastrum(diploid) 29.845
CNS0095594Slightly white alabastrum(diploid) 311.331
CNS0095595Whole white alabastrum(diploid) 210.706
CNS0095596Whole white alabastrum(diploid) 310.350
CNS0095597Whole white alabastrum(diploid) 46.831
CNS0095598Silvery flower (diploied) 110.111
CNS0095599Silvery flower (diploied) 28.234
CNS0095600Silvery flower (diploied) 310.368
CNS0095601Golden flower (diploid) 16.274
CNS0095602Golden flower (diploid) 29.380
CNS0095603Golden flower (diploid) 38.012
CNS0095604Slightly white alabastrum(tetraploid) 110.933
CNS0095605Slightly white alabastrum(tetraploid) 210.658
CNS0095606Slightly white alabastrum(tetraploid) 316.602
CNS0095607Whole white alabastrum(tetraploid) 17.107
CNS0095608Whole white alabastrum(tetraploid) 26.227
CNS0095609Whole white alabastrum(tetraploid) 310.452
CNS0095610Silvery flower (tetraploid) 110.584
CNS0095611Silvery flower (tetraploid) 211.368
CNS0095612Silvery flower (tetraploid) 39.030
CNS0095613Golden flower (tetraploid) 15.275
CNS0095614Golden flower (tetraploid) 210.848
CNS0095615Golden flower (tetraploid) 35.117
CRA001975CRR073297Stem 112.282
CRR073298Stem 211.290
CRR073299Stem 39.067
CRR073300Leaf 111.309
CRR073301Leaf 210.036
CRR073302Leaf 37.678
CRR073303Juvenile bud 110.676
CRR073304Juvenile bud 28.070
CRR073305Juvenile bud 311.803
CRR073306Third green 11.262
CRR073307Third green 22.198
CRR073308Third green 32.364
CRR073309Second white 12.970
CRR073310Second white 22.418
CRR073311Second white 32.128
CRR073312Silver flowering 11.992
CRR073313Silver flowering 23.383
CRR073314Silver flowering 32.882
CRR073315Gold flowering 13.179
CRR073316Gold flowering 25.390
CRR073317Gold flowering 34.002
CRR073318Tawny withering 16.016
CRR073319Tawny withering 27.768
CRR073320Tawny withering 36.802