Detail information of GWHGAAZE015802


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097445.10PREDICTED: eukaryotic translation initiation factor 5 [Sesamum indicum]
Swissprottr|P48724|IF5_PHAVU0Eukaryotic translation initiation factor 5
trEMBLtr|F6H0N4|F6H0N4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45531.1}
TAIR10AT1G77840.11E-134Translation initiation factor IF2/IF5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5771488457716233-
GWHAAZE00000004mRNA5771488457716233-
GWHAAZE00000004exon5771545457716233-
GWHAAZE00000004exon5771488457715414-
GWHAAZE00000004CDS5771545457716233-
GWHAAZE00000004CDS5771488457715414-
Transcript Sequence

Network for GWHGAAZE015802

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.18eIF-5_eIF-2B111273.90E-37
PF02020.19W23584361.70E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03262EIF5 RNA transport map03013
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE015802.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3050100150200250300350400450Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf236.408
SRR3591706second leaf106.750
SRR3591707mature leaf84.915
SRR3591708Shoot apex132.576
SRR3591709Stem213.720
SRR3591710White floral bud344.166
SRR3591711White flower412.708
SRR3591712Green floral bud265.533
SRR3591713Yellow flower358.997
SRP173429 SRR8316895Juvenile bud stage 58.737
SRR8316896Juvenile bud stage 70.192
SRR8316897Juvenile bud stage 24.509
SRR8316894Third green stage 38.410
SRR8316900Third green stage 131.088
SRR8316901Third green stage 131.371
SRR8316898Complete white stage 76.470
SRR8316899Complete white stage 131.036
SRR8316903Complete white stage 109.731
SRR8316902Silver flowering stage80.142
SRR8316904Silver flowering stage88.423
SRR8316905Silver flowering stage44.038
SRR8316906Gold flowering stage 117.811
SRR8316907Gold flowering stage 130.870
SRR8316908Gold flowering stage 149.093
SRP132670SRR6706286Control200.506
SRR6706287Light intensity 50%202.683
SRR6706288Light intensity 20%205.036
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.749
CNS0095593Slightly white alabastrum(diploid) 282.060
CNS0095594Slightly white alabastrum(diploid) 375.716
CNS0095595Whole white alabastrum(diploid) 289.354
CNS0095596Whole white alabastrum(diploid) 3102.236
CNS0095597Whole white alabastrum(diploid) 481.814
CNS0095598Silvery flower (diploied) 166.375
CNS0095599Silvery flower (diploied) 252.392
CNS0095600Silvery flower (diploied) 3140.160
CNS0095601Golden flower (diploid) 155.838
CNS0095602Golden flower (diploid) 299.812
CNS0095603Golden flower (diploid) 3101.980
CNS0095604Slightly white alabastrum(tetraploid) 1101.171
CNS0095605Slightly white alabastrum(tetraploid) 293.304
CNS0095606Slightly white alabastrum(tetraploid) 3162.171
CNS0095607Whole white alabastrum(tetraploid) 183.034
CNS0095608Whole white alabastrum(tetraploid) 282.507
CNS0095609Whole white alabastrum(tetraploid) 3129.622
CNS0095610Silvery flower (tetraploid) 1157.532
CNS0095611Silvery flower (tetraploid) 2104.100
CNS0095612Silvery flower (tetraploid) 3164.238
CNS0095613Golden flower (tetraploid) 197.947
CNS0095614Golden flower (tetraploid) 2115.104
CNS0095615Golden flower (tetraploid) 3106.420
CRA001975CRR073297Stem 1155.282
CRR073298Stem 2143.779
CRR073299Stem 3147.793
CRR073300Leaf 1162.869
CRR073301Leaf 2150.999
CRR073302Leaf 3144.788
CRR073303Juvenile bud 1156.532
CRR073304Juvenile bud 2152.449
CRR073305Juvenile bud 3178.812
CRR073306Third green 1216.584
CRR073307Third green 2186.662
CRR073308Third green 3208.936
CRR073309Second white 1127.891
CRR073310Second white 2120.386
CRR073311Second white 3118.231
CRR073312Silver flowering 1125.535
CRR073313Silver flowering 2122.883
CRR073314Silver flowering 3134.348
CRR073315Gold flowering 161.207
CRR073316Gold flowering 286.611
CRR073317Gold flowering 338.697
CRR073318Tawny withering 1146.726
CRR073319Tawny withering 2110.592
CRR073320Tawny withering 3139.422