Gene detail

Detail information of GWHGAAZE015812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080998.1	2.8658E-133	PREDICTED: uncharacterized protein LOC105164123 [Sesamum indicum]
trEMBL	tr\|A0A022QTB4\|A0A022QTB4_ERYGU	2E-126	Uncharacterized protein {ECO:0000313\|EMBL:EYU29730.1}
TAIR10	AT4G20330.1	6E-72	Transcription initiation factor TFIIE, beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	57875436	57879044	-
GWHAAZE00000004	mRNA	57875436	57879044	-
GWHAAZE00000004	exon	57875436	57875662	-
GWHAAZE00000004	exon	57875769	57875802	-
GWHAAZE00000004	exon	57877592	57877747	-
GWHAAZE00000004	exon	57877872	57878003	-
GWHAAZE00000004	exon	57878772	57879044	-
GWHAAZE00000004	CDS	57878772	57879044	-
GWHAAZE00000004	CDS	57877872	57878003	-
GWHAAZE00000004	CDS	57877592	57877747	-
GWHAAZE00000004	CDS	57875769	57875802	-
GWHAAZE00000004	CDS	57875436	57875662	-

Transcript Sequence
>GWHTAAZE015828 ATGGCATCATTGCAAGAAAGTTTGAATAGATTCAAGAAGCAGCAAGAGAAGTGTCAATCAACCCTAACCAGCATTGCAGCAAAATCAAGTTCAAAGTCAGCGGCCACCTCTAAAGGCACGCCCTATATTGCGCCTCCTGCAGTCAGTGCTGCCAAGTCTCTGGCACCTGCAATTAAATTTTCAAATGATACAGAGAGGCTTCAACACATCAACAGTATAAGGAAAGCCCCTGTAGGCGCTCAGATCAAACGTGTTATTGACTTGCTCTTTGAGACAAGGCAAGCCTTTACGCCAGAGCAAATAAATGAATCATGCCATGTTGATGTGAATGGGAACAAGGCGGTCTTTGACAGTTTAAGAAACAACTTGAAAGTAAGCTATGACGGGAAGCGCTTTGCCTACAAGTCCAAGCATGCTCTAAAAGACAAGGATCAACTTCTTGTCTTAATACGGAAATTTCCCGAAGGTATTGCTGTCATTGATCTCAAGGATGCATACCCCACCGTCATGGAGGACTTGCAGGTATTTTTTTTTGTTTATTTTTTCTTTTTATCATTTTCAATTTTACCCCACCCCCAGTCTTTGAAATCCACAGGGATCGAATTACCCCGCGATATGATCGACATAGAGAAGGATCTACAGAAGAACGGGATGAAACCCGCCACAAATACGGCAAAGCGGAGAGCCATGGCACAGGTCCTTGGGGCTGGACCCAAGCCCAAGCCCAAGAAGAAGAAGCACGAAATCAGCAAGAGGACCAAGCTTACCAACGCTCACTTGCCTGAGCTTTTCCAGAACCTCAATGTTCCCGGTTCACGATGA

Network for GWHGAAZE015812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02186.16	TFIIE_beta	80	138	1.10E-07
PF18121.2	TFA2_Winged_2	141	174	1.90E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03137	TFIIE2, GTF2E2, TFA2	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.366
	SRR3591706	second leaf	8.193
	SRR3591707	mature leaf	14.845
	SRR3591708	Shoot apex	17.088
	SRR3591709	Stem	25.793
	SRR3591710	White floral bud	32.783
	SRR3591711	White flower	26.252
	SRR3591712	Green floral bud	20.934
	SRR3591713	Yellow flower	26.337
SRP173429	SRR8316895	Juvenile bud stage	5.971
	SRR8316896	Juvenile bud stage	14.462
	SRR8316897	Juvenile bud stage	7.404
	SRR8316894	Third green stage	6.314
	SRR8316900	Third green stage	18.966
	SRR8316901	Third green stage	22.898
	SRR8316898	Complete white stage	7.469
	SRR8316899	Complete white stage	23.954
	SRR8316903	Complete white stage	15.573
	SRR8316902	Silver flowering stage	10.193
	SRR8316904	Silver flowering stage	10.406
	SRR8316905	Silver flowering stage	7.971
	SRR8316906	Gold flowering stage	26.255
	SRR8316907	Gold flowering stage	19.644
	SRR8316908	Gold flowering stage	28.960
SRP132670	SRR6706286	Control	12.783
	SRR6706287	Light intensity 50%	14.905
	SRR6706288	Light intensity 20%	12.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.488
	CNS0095593	Slightly white alabastrum(diploid) 2	12.579
	CNS0095594	Slightly white alabastrum(diploid) 3	12.119
	CNS0095595	Whole white alabastrum(diploid) 2	12.954
	CNS0095596	Whole white alabastrum(diploid) 3	12.800
	CNS0095597	Whole white alabastrum(diploid) 4	14.417
	CNS0095598	Silvery flower (diploied) 1	11.310
	CNS0095599	Silvery flower (diploied) 2	12.346
	CNS0095600	Silvery flower (diploied) 3	21.959
	CNS0095601	Golden flower (diploid) 1	10.322
	CNS0095602	Golden flower (diploid) 2	21.047
	CNS0095603	Golden flower (diploid) 3	20.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.493
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.724
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.460
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.823
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.808
	CNS0095610	Silvery flower (tetraploid) 1	26.793
	CNS0095611	Silvery flower (tetraploid) 2	24.953
	CNS0095612	Silvery flower (tetraploid) 3	28.850
	CNS0095613	Golden flower (tetraploid) 1	19.203
	CNS0095614	Golden flower (tetraploid) 2	21.329
	CNS0095615	Golden flower (tetraploid) 3	22.246
CRA001975	CRR073297	Stem 1	8.248
	CRR073298	Stem 2	11.850
	CRR073299	Stem 3	16.526
	CRR073300	Leaf 1	13.605
	CRR073301	Leaf 2	13.269
	CRR073302	Leaf 3	12.156
	CRR073303	Juvenile bud 1	15.750
	CRR073304	Juvenile bud 2	12.392
	CRR073305	Juvenile bud 3	17.437
	CRR073306	Third green 1	21.208
	CRR073307	Third green 2	20.689
	CRR073308	Third green 3	24.032
	CRR073309	Second white 1	17.834
	CRR073310	Second white 2	19.326
	CRR073311	Second white 3	15.947
	CRR073312	Silver flowering 1	15.594
	CRR073313	Silver flowering 2	13.498
	CRR073314	Silver flowering 3	7.122
	CRR073315	Gold flowering 1	4.452
	CRR073316	Gold flowering 2	11.948
	CRR073317	Gold flowering 3	10.269
	CRR073318	Tawny withering 1	6.846
	CRR073319	Tawny withering 2	12.370
	CRR073320	Tawny withering 3	15.665