Gene detail

Detail information of GWHGAAZE015816

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO80794.1	0	hypothetical protein CISIN_1g007486mg [Citrus sinensis]
Swissprot	tr\|Q39008\|M3K1_ARATH	5E-166	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|A0A067GZP7\|A0A067GZP7_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO80796.1}
TAIR10	AT4G08500.1	3E-127	MAPK/ERK kinase kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	58211845	58227330	+
GWHAAZE00000004	mRNA	58211845	58227330	+
GWHAAZE00000004	exon	58211845	58212926	+
GWHAAZE00000004	exon	58214249	58214333	+
GWHAAZE00000004	exon	58214476	58214538	+
GWHAAZE00000004	exon	58221127	58221284	+
GWHAAZE00000004	exon	58222629	58222701	+
GWHAAZE00000004	exon	58222796	58222855	+
GWHAAZE00000004	exon	58223764	58223874	+
GWHAAZE00000004	exon	58224438	58224682	+
GWHAAZE00000004	exon	58227089	58227330	+
GWHAAZE00000004	CDS	58211845	58212926	+
GWHAAZE00000004	CDS	58214249	58214333	+
GWHAAZE00000004	CDS	58214476	58214538	+
GWHAAZE00000004	CDS	58221127	58221284	+
GWHAAZE00000004	CDS	58222629	58222701	+
GWHAAZE00000004	CDS	58222796	58222855	+
GWHAAZE00000004	CDS	58223764	58223874	+
GWHAAZE00000004	CDS	58224438	58224653	+
GWHAAZE00000004	three_prime_UTR	58224654	58224682	+
GWHAAZE00000004	three_prime_UTR	58227089	58227330	+

Transcript Sequence
>GWHTAAZE015832 ATGGACTCCAAGATGAAGCTGAGGAGGCCGAAGCTTGATAGGAGATATGCGCTGAAGAATGTAGACTATGACGCCACAACCTCTTCTTCAGAGGAATCGTGTGCTCTACGAACTCGATCGTTAGATCTATCTCCGATTGGTGATCGAACGAGCTTTAGAATTGAAGGAACTGAGGGGGAAATTGATATGATTTATCGGACTTTAGGGCTTTCGGAACCAGAAGATTTTGGGATTCCGTTGGCAGCGTGGGAGGCGAGGAAGATGCGATCATCTTCGGATCTTCTCCCGAGATCTAGGTTGAACAAGGGATTGGATTTTACTAAGTTTGAGGCACGTGATGGTTTGGATAGGGAAATGGCTGTTTTGTTTGATAGTAATGTTAGGGTTGGTGATGTAGCTGGTGATCGAATTGAGACTGCTCAGTTGATTACTTGTAGTACTGGCGGTGATGGTGGAAATGTAGAAATTTGCAATTCTTGTACTACTGGTGGTGATGGTGGAAATGTAGAAATTTGCAATTCCTGTACTACTGGTGGTGATGGTGGAAATGTAGAAATTTGCAAATTGTCAGATAAGTTAGAGGAGAGTGGTTTAGTTGTGAATTGGAATAGAGGAGACAAGTCAGTGGAATGTGCAGTTCCTATTGAGTTATCTAGTGGTGGGGGAAGAGGTGGTGGCAGTGGAGGAATTAAGGGAGTCCGGCCACCATTTCTAGCTCCACCGCCATCTATTTCATTGCCTGTAATTGATAATTATGGTTCGACTTGGGATATAATGAGATCTTTTGCTCCGGATGATGGTAGAAGTTCTTCAATTGTAAATCTTGGAGGGTTTAGTTATGCTGATGAGGAAGAAGATGATGGAGAGGTTGTGAAGGAACAGATTTGGGTAGGAGAGACTGCTGTTCTTTCGGGGTCTTGTTCATTTACAACTACATCAAATGATGATGATTCTTCCAGTACTACTACTGCCACTGAGAATATATCGCCGAATGGAAGATTCATACGATGTATTACAAATTGGCAAAAGGGTGAGCTTCTTGGACGTGGTTCGTTTGGATCGGTATATGAAGGAATTGCAGATGGTGGATTCTTTTTTGCTGTGAAGGAAGTTTCTTTGCTGGATCAAGGGGACCAGGGAAAGCAAAGTATTCTCCAACTTGAACAGGAGATTGCTCTTCTAAGTCAGTTCGAACATGAGAATATACTTCAATATTATGGTACAGATAAGGATGCATCAAAACTGTACATCTTTCTTGAGCTGGTGACAAAAGGTTCTCTTTTGAGACTGTACCAGAAGTATCATCTTCAAGATTCCCAAGTCTCTGCATATACAAGACAGATTTTGCATGGTTTGAAGTATCTGCATGATAAAAATGTGGTACACAGGGACATCAAATGTGCAAATATATTGGTCGATGCTAGTGGATCTGTAAAACTTGCAGATTTTGGGCTGGCAAAGGCAACTAAGTTAAATGATGTGAAATCCTGCAAGGGTACTGTATTTTGGATGGCTCCTGAGGTTGTTAATGGACAAAACAAGGGTTATGGGCTTGCTGCAGATATATGGAGCCTTGGCTGTACTGTCCTAGAAATGTTGACACGTCAACTTCCATACTACCCTTTGGAATGTATGCAGGCAATGTTTAGGATCGGAAGGGCAATTCCACCACCTGTTCCAGAATCACTCTCAACAGACGCACGCAGTTTCATTGTCCAATGCCTACAAGTGAACCCAGATTTTCGTCCCACTGCTGCTCAGCTTTTAGACCACCCCTTTGTCAAAAGGGCATTATTACCTTCAACCTCCGGTTCTGCATCTCCTTACAATCTTGGCAGGCGGGTTTGAATGATCCATCATATTTGAAGACAAATGAGGTAACTCTTTGCCCAAGTCCATTGGCATTTTGTTAGTGTTTCACCCCTCGATTTTAGTGGCTTAGTCAAAGGAAAATGCAGTTTGTCATTGGAGGAGAGACGGGCTATGTCAAAGTCATAAAATTACTTCGCGCATCATCAATGTTTGAATATGAACTCCCAAGACTTGCAGTACTTCTCGATCGTGGGAATTATATATCATTGCTTTCTTATCTTGTGTTAGATTAACACGATTTTGTAGG

Network for GWHGAAZE015816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	342	594	6.50E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.421
	SRR3591706	second leaf	14.804
	SRR3591707	mature leaf	23.680
	SRR3591708	Shoot apex	15.441
	SRR3591709	Stem	26.221
	SRR3591710	White floral bud	21.412
	SRR3591711	White flower	29.329
	SRR3591712	Green floral bud	18.899
	SRR3591713	Yellow flower	30.039
SRP173429	SRR8316895	Juvenile bud stage	11.736
	SRR8316896	Juvenile bud stage	16.892
	SRR8316897	Juvenile bud stage	11.788
	SRR8316894	Third green stage	6.417
	SRR8316900	Third green stage	12.446
	SRR8316901	Third green stage	16.634
	SRR8316898	Complete white stage	4.668
	SRR8316899	Complete white stage	22.466
	SRR8316903	Complete white stage	13.299
	SRR8316902	Silver flowering stage	8.461
	SRR8316904	Silver flowering stage	13.969
	SRR8316905	Silver flowering stage	6.185
	SRR8316906	Gold flowering stage	21.148
	SRR8316907	Gold flowering stage	19.118
	SRR8316908	Gold flowering stage	25.252
SRP132670	SRR6706286	Control	15.347
	SRR6706287	Light intensity 50%	15.908
	SRR6706288	Light intensity 20%	15.696
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.629
	CNS0095593	Slightly white alabastrum(diploid) 2	15.493
	CNS0095594	Slightly white alabastrum(diploid) 3	10.237
	CNS0095595	Whole white alabastrum(diploid) 2	10.327
	CNS0095596	Whole white alabastrum(diploid) 3	7.072
	CNS0095597	Whole white alabastrum(diploid) 4	8.139
	CNS0095598	Silvery flower (diploied) 1	20.218
	CNS0095599	Silvery flower (diploied) 2	14.921
	CNS0095600	Silvery flower (diploied) 3	25.699
	CNS0095601	Golden flower (diploid) 1	18.419
	CNS0095602	Golden flower (diploid) 2	27.795
	CNS0095603	Golden flower (diploid) 3	26.462
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.251
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.204
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.908
	CNS0095610	Silvery flower (tetraploid) 1	25.744
	CNS0095611	Silvery flower (tetraploid) 2	25.239
	CNS0095612	Silvery flower (tetraploid) 3	24.955
	CNS0095613	Golden flower (tetraploid) 1	14.248
	CNS0095614	Golden flower (tetraploid) 2	22.292
	CNS0095615	Golden flower (tetraploid) 3	23.058
CRA001975	CRR073297	Stem 1	15.720
	CRR073298	Stem 2	14.284
	CRR073299	Stem 3	11.028
	CRR073300	Leaf 1	15.303
	CRR073301	Leaf 2	12.608
	CRR073302	Leaf 3	11.009
	CRR073303	Juvenile bud 1	9.123
	CRR073304	Juvenile bud 2	5.994
	CRR073305	Juvenile bud 3	12.126
	CRR073306	Third green 1	9.155
	CRR073307	Third green 2	5.710
	CRR073308	Third green 3	8.318
	CRR073309	Second white 1	6.915
	CRR073310	Second white 2	7.654
	CRR073311	Second white 3	11.291
	CRR073312	Silver flowering 1	12.210
	CRR073313	Silver flowering 2	8.455
	CRR073314	Silver flowering 3	9.673
	CRR073315	Gold flowering 1	11.629
	CRR073316	Gold flowering 2	19.892
	CRR073317	Gold flowering 3	9.851
	CRR073318	Tawny withering 1	17.723
	CRR073319	Tawny withering 2	16.753
	CRR073320	Tawny withering 3	11.794