Gene detail

Detail information of GWHGAAZE015850

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664250.1	0	PREDICTED: serine/threonine-protein kinase mph1 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q39008\|M3K1_ARATH	1E-22	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|F6H0L8\|F6H0L8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45515.1}
TAIR10	AT1G77720.1	0	putative protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60099081	60105699	+
GWHAAZE00000004	mRNA	60099081	60105699	+
GWHAAZE00000004	exon	60099081	60100130	+
GWHAAZE00000004	exon	60101657	60101857	+
GWHAAZE00000004	exon	60104352	60104513	+
GWHAAZE00000004	exon	60105118	60105699	+
GWHAAZE00000004	CDS	60099081	60100130	+
GWHAAZE00000004	CDS	60101657	60101857	+
GWHAAZE00000004	CDS	60104352	60104513	+
GWHAAZE00000004	CDS	60105118	60105699	+

Transcript Sequence
>GWHTAAZE015866 ATGCTACAAACTGTCTATGCAGGGGCCGATGATCAAATGGCCACTGAATTGGACAACTTATTGTCTCATATGAGTTCACTTGCATTCACAGAAATGGAATGGGATGTGAGCAATCCAGTGGAGACTTCAATTGTTAACGGTCAAGAAGTAAAGCATCAGAGTTTTCAAAACTTGGAAGTGGATGTTAGCGTAAGATCTGATGGAGGAATTTCTTCTCTGATGGGAAAGAAAACTACTGGAATTCAAGATCAACTGCACAAATTCGGAAATTTTCTACTGAGTGATTGTAGCCATGCGATGACTCAATCTTCGGTTGTTGGTTCATCTTGTGCTACAACAACTTTAATGAATTCAGCTTCTGCTCCTATGCGTAATTCCACCACTTATTGTTCCCATCCTCACCAGAATAGTAGTTCTGATTTGAATTCTCTGCCCGTGACCCTTCAAGATATGGTGCACCCACCACAGCTTTCATCGAACCACACCAGTGGAATGTTAGCCGAGCAGCCACCTGTTGGAACCCAAGCTCCCAGCTCGGTTCTTGAATCCCAATCGGAAGTTAAGGAATATGATCTCTCTAAGGGCAAACAAAGCAATGTGCTCAAGGAATGTGAAATTTCAAAACATCCCCCACCTCTCGATGACAAGTCAACCAAAGGGAACACATTTGAAGGTGATATTAGTGATGTAAAGTCTCAAGCACCCGTATCAAAAGACCAATCTTTGGATGTGAAGTTGGAACCTTCAAAGTCAGAAAAACAAGAAAATGTTGTTAGTGGTAGAGCAGCATCAGCGCCTCGTAAAAGAAATTACGATCCTGACTTGTTTTTTAAGGTTAATGGGAAGCTTTATCAAAGACTTGGCAAGATAGGTAGTGGAGGAAGTAGCGAAGTCCACAAAGTCATTTCATCAGATTGCACTATCTATGCCTTGAAAAGAATTAAGCTAAAAGGACGTGACTATGCAACTGCGTATGGGTTTTGTCAAGAGATTCAATATTTAAACAAACTGAAGGGAAAAAGTTACATTATTCAACTCATTGACTATGAGGTGACAGACAAAGCTTTGCTAAAAGAAGTACTGAATGGTTCCATGAGTATTAGGGAAGGAAGATTCAAGGAAGACGGGTATATATACATGGTGCTTGAATATGGTGAAATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAGAGAACTGGATAGCTCTAAGACAACTATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATGCTTCTAGCGGTAAATACCATACATGAGGAACGTATTGTGCACTCGGACTTAAAGCCGGCTAATTTTCTTCTTGTCAAAGGTTCACTTAAGCTGATTGATTTTGGTATTGCCAAAGCAATAATGAGTGACACTACTAACATTCAACGAGATTCACAGGTGGGCACACTTAGTTACATGTCCCCCGAAGCATTCTTGTGCAATGAATCGGATGCGAATGGAAACACTATAAAGTGTGGCCGCCCATCGGACATTTGGTCCCTCGGTTGCATCCTTTACCAAATGGTTTATGGTCAAACCCCCTTCTCCGAATACAAAACATTTTGGGCGAAATTTAAAGTCATTACAAACCCAAACCACGAAATTACATTCGAACCGGTCCCCAACCCGTGGCTACTTGATCTCATGAAGAAGTGTCTTGCATGGGACCGAAATCAACGGTGGAGAATCCCCGAGCTACTTACTCACCCTTTTCTAGTTCCCCGGGCCCCACCCCCCCAAGTCTCTCCTACCCCACAAGATGATAAGTGTAGACTCCTTGAATTTATTGCTGAATCTTGTAGAAATGACGGCAAAGCTTTGAAGCTATGTTGCGAGCTCCAAGAACTATTGAGGGACACACGGCCGAGTATAAAATCTCAAGCATCTTTATCGGAAGATCAACGGTGTAAGTTGCTCCGTGAATTATCGAATCTTCGTGTTCAACTTGAGGAACAATTAGCTACCCCGGAAAGAGAGTAA

Network for GWHGAAZE015850

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	284	577	4.30E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TTK

KEGG pathway

KO	Enzyme	pathway	mapID
K08866	TTK, MPS1	Cell cycle	map04110
K08866	TTK, MPS1	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.973
	SRR3591706	second leaf	0.343
	SRR3591707	mature leaf	0.054
	SRR3591708	Shoot apex	5.943
	SRR3591709	Stem	1.116
	SRR3591710	White floral bud	0.223
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.171
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	0.500
	SRR8316896	Juvenile bud stage	0.405
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.171
	SRR8316900	Third green stage	0.252
	SRR8316901	Third green stage	0.117
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.079
	SRR8316903	Complete white stage	0.097
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.023
	SRR8316907	Gold flowering stage	0.112
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.211
	SRR6706287	Light intensity 50%	0.139
	SRR6706288	Light intensity 20%	0.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.592
	CNS0095593	Slightly white alabastrum(diploid) 2	0.276
	CNS0095594	Slightly white alabastrum(diploid) 3	0.437
	CNS0095595	Whole white alabastrum(diploid) 2	0.118
	CNS0095596	Whole white alabastrum(diploid) 3	0.077
	CNS0095597	Whole white alabastrum(diploid) 4	0.031
	CNS0095598	Silvery flower (diploied) 1	0.272
	CNS0095599	Silvery flower (diploied) 2	0.267
	CNS0095600	Silvery flower (diploied) 3	0.022
	CNS0095601	Golden flower (diploid) 1	0.050
	CNS0095602	Golden flower (diploid) 2	0.088
	CNS0095603	Golden flower (diploid) 3	0.088
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.434
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.116
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.576
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.113
	CNS0095610	Silvery flower (tetraploid) 1	0.065
	CNS0095611	Silvery flower (tetraploid) 2	0.154
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.008
	CNS0095614	Golden flower (tetraploid) 2	0.099
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	0.614
	CRR073298	Stem 2	0.639
	CRR073299	Stem 3	0.738
	CRR073300	Leaf 1	0.420
	CRR073301	Leaf 2	0.322
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.210
	CRR073304	Juvenile bud 2	0.129
	CRR073305	Juvenile bud 3	0.095
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.078
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.271
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.189
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.182
	CRR073316	Gold flowering 2	0.073
	CRR073317	Gold flowering 3	0.017
	CRR073318	Tawny withering 1	1.376
	CRR073319	Tawny withering 2	1.040
	CRR073320	Tawny withering 3	1.605