Gene detail

Detail information of GWHGAAZE015852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271836.1	2.9293E-100	PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera]
trEMBL	tr\|D7U335\|D7U335_VITVI	1E-99	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37152.3}
TAIR10	AT5G07900.1	5E-71	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60549689	60550570	+
GWHAAZE00000004	mRNA	60549689	60550570	+
GWHAAZE00000004	exon	60549689	60550570	+
GWHAAZE00000004	CDS	60549689	60550570	+

Transcript Sequence
>GWHTAAZE015868 ATGGTTAGAATACGCCCCAGGATTCTTTTTTCAGATCCCAAGAAAAACCTGATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAAGAACCGATATGCCAAGAATTCTCTCGTTGAATCCGTCTTTGTTAGGGAGGAGTTTAGAGAATCAGTTGATTCCTTGTCATAACTTCCTAAAAAATGTACTAATTCTTGATGAAAATGTTGTTAAGATGTTAAAGCGGAATTCAAGGATACTTATTCATGATTTTGAGAAGAATATTGGTCCGAATATTAGTTCATTGAGTAGGGTTGGGGTTTCTAAATCGCTAATTTTGTTCATGTTGTTTCATTTTCCGTCTGTTGCTTGTCAAAATCACAAGAAGTTTAAGAAAGTGGTAGAGGAAGTAATTGGAATGGGATTTAATCCGTTGAGGTCTATGTTTGTTCAAGCTGTTCAAGTGATTTGTGGAATGACTAAAACAACGTGGGATCGTAAATGGGCAGCGTATAGGATGTGGGATTTGTCCGATGACGAGATTCTAATGGCGTTTAGATCGCACCCGGTGTGCATGAAATTGTCTGAGGAGAAAATTATGAGGGAAATGGATTTTCTTGTGAACAAAATGGGTTGGAAGGCTGTGAAAATCGCTAGGTGTCCGGCCGTACTTTTTTTCAATTTCGAAAATAGGATCGTTCCGAGGTGTAGAGTAATAAAAGTGTTGATATCGGAGGGAATTTTGAAGAAAGATATGAGCTTGGGTACCTTTTTGATGCCTTCGGAAAATCAATTCTTGGAAAGGTTTGTGAGCAACTATGAAGACAAAGTTCCTGAGCTGCTAGATGTTTATCGAGGGAAGACGGTTCGTTTGAAAACAGGACTTCAATCCAAGGATTGA

Network for GWHGAAZE015852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	3	137	1.20E-15
PF02536.15	mTERF	168	260	4.90E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.906
	SRR3591706	second leaf	1.560
	SRR3591707	mature leaf	1.431
	SRR3591708	Shoot apex	2.485
	SRR3591709	Stem	1.699
	SRR3591710	White floral bud	2.513
	SRR3591711	White flower	2.123
	SRR3591712	Green floral bud	4.879
	SRR3591713	Yellow flower	2.627
SRP173429	SRR8316895	Juvenile bud stage	2.507
	SRR8316896	Juvenile bud stage	3.154
	SRR8316897	Juvenile bud stage	0.498
	SRR8316894	Third green stage	1.962
	SRR8316900	Third green stage	5.799
	SRR8316901	Third green stage	4.355
	SRR8316898	Complete white stage	1.462
	SRR8316899	Complete white stage	6.478
	SRR8316903	Complete white stage	1.219
	SRR8316902	Silver flowering stage	1.159
	SRR8316904	Silver flowering stage	0.825
	SRR8316905	Silver flowering stage	0.377
	SRR8316906	Gold flowering stage	1.364
	SRR8316907	Gold flowering stage	0.936
	SRR8316908	Gold flowering stage	1.108
SRP132670	SRR6706286	Control	3.215
	SRR6706287	Light intensity 50%	2.994
	SRR6706288	Light intensity 20%	3.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.025
	CNS0095593	Slightly white alabastrum(diploid) 2	3.191
	CNS0095594	Slightly white alabastrum(diploid) 3	1.804
	CNS0095595	Whole white alabastrum(diploid) 2	2.086
	CNS0095596	Whole white alabastrum(diploid) 3	2.859
	CNS0095597	Whole white alabastrum(diploid) 4	2.197
	CNS0095598	Silvery flower (diploied) 1	2.288
	CNS0095599	Silvery flower (diploied) 2	1.150
	CNS0095600	Silvery flower (diploied) 3	1.568
	CNS0095601	Golden flower (diploid) 1	2.530
	CNS0095602	Golden flower (diploid) 2	1.334
	CNS0095603	Golden flower (diploid) 3	1.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.783
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.460
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.418
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.908
	CNS0095610	Silvery flower (tetraploid) 1	0.404
	CNS0095611	Silvery flower (tetraploid) 2	0.618
	CNS0095612	Silvery flower (tetraploid) 3	0.539
	CNS0095613	Golden flower (tetraploid) 1	0.381
	CNS0095614	Golden flower (tetraploid) 2	0.509
	CNS0095615	Golden flower (tetraploid) 3	0.070
CRA001975	CRR073297	Stem 1	1.228
	CRR073298	Stem 2	2.227
	CRR073299	Stem 3	1.218
	CRR073300	Leaf 1	1.316
	CRR073301	Leaf 2	2.089
	CRR073302	Leaf 3	1.315
	CRR073303	Juvenile bud 1	1.468
	CRR073304	Juvenile bud 2	1.247
	CRR073305	Juvenile bud 3	1.037
	CRR073306	Third green 1	0.024
	CRR073307	Third green 2	0.437
	CRR073308	Third green 3	0.213
	CRR073309	Second white 1	0.214
	CRR073310	Second white 2	0.224
	CRR073311	Second white 3	0.292
	CRR073312	Silver flowering 1	0.257
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.858
	CRR073316	Gold flowering 2	2.162
	CRR073317	Gold flowering 3	1.188
	CRR073318	Tawny withering 1	1.614
	CRR073319	Tawny withering 2	1.334
	CRR073320	Tawny withering 3	1.582