Gene detail

Detail information of GWHGAAZE015854

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271667.2	4.77092E-60	PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
trEMBL	tr\|F6HZN0\|F6HZN0_VITVI	3E-57	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60145.1}
TAIR10	AT5G07900.1	1E-40	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60562961	60564063	+
GWHAAZE00000004	mRNA	60562961	60564063	+
GWHAAZE00000004	exon	60562961	60563525	+
GWHAAZE00000004	exon	60563666	60563770	+
GWHAAZE00000004	exon	60563864	60563890	+
GWHAAZE00000004	exon	60563981	60564063	+
GWHAAZE00000004	CDS	60562961	60563525	+
GWHAAZE00000004	CDS	60563666	60563770	+
GWHAAZE00000004	CDS	60563864	60563890	+
GWHAAZE00000004	CDS	60563981	60564063	+

Transcript Sequence
>GWHTAAZE015870 ATGTTGTTTCAGTTTCCATCTGTTGCTTGTCAAAATCACAAAAAGTTTAAGAGAGTGGTAGAGGAAGTTATTGGAATGGGATTTAATCCGTCGAGGTGTATATTTGTTCAAGCGGTTCAAGTGATTTGTGAAATGACTAAAACGACGTTGAATCGTAAATTGGTGGCGTATAGAAGGTGGGGTTTGTCCAATGATGAGATTCTAATGGCGTTTAGATCGCACCCGGTGTGCATGAATTTGTCCGAGGAGAAAATAACGAGGGGAATGGATTTTCTTGTGAACCAAATGGGTTGGGAGGCTGTGAAAGTCGCTAGGTGTCCGGCCGTACTTTTTTTCAATTTGGAAAAAAGGATCATACCGAGGTGTAGAGTAATAAAAGTGTTGATATTGGAGGGAATTTTGAAGAAAGATACGAGCTTGGGTTACTTTTTGAAGCCTTCGGAAAATGAATTCTTGGAAAGGTTTGTGAGGAACTATGAAGACAAAGTTCCCGAGCTGCTAAATGTTTATCGAGGGAAGACGGTTCATTTTAAAACAGGATTTCGTTCCAAGGAACTGACATGTGTAACAATTGCTTTTATTGACGTTGAAAACTCTCGTCATCTGGGACCTTGTTCACCCCTTCGGGCTTTTGGACCTGGAACCAGACAAAGTGCGGGAAGGGGTATAGCCCTGGAATTGCTATATATCAATGAAGAAGCTTTAGCCTCTAAATTGGCTGCTGAAGCTTGGTATTGGCAAAACAAATCTAGAATGAACTGGGCCAAATTGGAGATGTGA

Network for GWHGAAZE015854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	1	152	2.20E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.422
	SRR3591706	second leaf	1.650
	SRR3591707	mature leaf	1.378
	SRR3591708	Shoot apex	4.656
	SRR3591709	Stem	2.543
	SRR3591710	White floral bud	2.811
	SRR3591711	White flower	3.458
	SRR3591712	Green floral bud	3.684
	SRR3591713	Yellow flower	1.565
SRP173429	SRR8316895	Juvenile bud stage	2.408
	SRR8316896	Juvenile bud stage	2.911
	SRR8316897	Juvenile bud stage	0.501
	SRR8316894	Third green stage	0.838
	SRR8316900	Third green stage	2.942
	SRR8316901	Third green stage	3.519
	SRR8316898	Complete white stage	0.711
	SRR8316899	Complete white stage	4.738
	SRR8316903	Complete white stage	1.924
	SRR8316902	Silver flowering stage	0.787
	SRR8316904	Silver flowering stage	1.269
	SRR8316905	Silver flowering stage	0.490
	SRR8316906	Gold flowering stage	2.244
	SRR8316907	Gold flowering stage	2.947
	SRR8316908	Gold flowering stage	1.557
SRP132670	SRR6706286	Control	2.707
	SRR6706287	Light intensity 50%	2.932
	SRR6706288	Light intensity 20%	3.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.359
	CNS0095593	Slightly white alabastrum(diploid) 2	4.655
	CNS0095594	Slightly white alabastrum(diploid) 3	2.791
	CNS0095595	Whole white alabastrum(diploid) 2	4.236
	CNS0095596	Whole white alabastrum(diploid) 3	2.842
	CNS0095597	Whole white alabastrum(diploid) 4	3.500
	CNS0095598	Silvery flower (diploied) 1	3.307
	CNS0095599	Silvery flower (diploied) 2	2.752
	CNS0095600	Silvery flower (diploied) 3	1.466
	CNS0095601	Golden flower (diploid) 1	2.347
	CNS0095602	Golden flower (diploid) 2	2.103
	CNS0095603	Golden flower (diploid) 3	1.594
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.825
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.478
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.980
	CNS0095610	Silvery flower (tetraploid) 1	1.247
	CNS0095611	Silvery flower (tetraploid) 2	1.937
	CNS0095612	Silvery flower (tetraploid) 3	1.316
	CNS0095613	Golden flower (tetraploid) 1	1.196
	CNS0095614	Golden flower (tetraploid) 2	1.722
	CNS0095615	Golden flower (tetraploid) 3	0.680
CRA001975	CRR073297	Stem 1	2.225
	CRR073298	Stem 2	3.180
	CRR073299	Stem 3	2.005
	CRR073300	Leaf 1	1.752
	CRR073301	Leaf 2	2.083
	CRR073302	Leaf 3	1.179
	CRR073303	Juvenile bud 1	2.105
	CRR073304	Juvenile bud 2	0.560
	CRR073305	Juvenile bud 3	0.694
	CRR073306	Third green 1	0.142
	CRR073307	Third green 2	0.023
	CRR073308	Third green 3	0.171
	CRR073309	Second white 1	0.244
	CRR073310	Second white 2	0.051
	CRR073311	Second white 3	0.400
	CRR073312	Silver flowering 1	0.088
	CRR073313	Silver flowering 2	0.272
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.636
	CRR073316	Gold flowering 2	0.088
	CRR073317	Gold flowering 3	0.116
	CRR073318	Tawny withering 1	0.622
	CRR073319	Tawny withering 2	1.338
	CRR073320	Tawny withering 3	0.871