Gene detail

Detail information of GWHGAAZE015859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011033588.1	2.2334E-101	PREDICTED: uncharacterized protein LOC105132030 [Populus euphratica]
trEMBL	tr\|B9I9V1\|B9I9V1_POPTR	4E-101	Uncharacterized protein {ECO:0000313\|EMBL:EEE99342.2}
TAIR10	AT5G07900.1	1E-72	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60655243	60656355	+
GWHAAZE00000004	mRNA	60655243	60656355	+
GWHAAZE00000004	exon	60655243	60656355	+
GWHAAZE00000004	CDS	60655243	60656355	+

Transcript Sequence
>GWHTAAZE015875 ATGTTAACAATCCTATTCACTAAAAGAATTATATCCCCAAATCCCCTCAACCTCAATTACTTGACCACCAAATTCCTTATTCTTCAAAACAAATCCCCAATCAACCCATTTTCTTGCTCACAATCATCCTATTCATCACAATCAGAATCCAATTTCACCCCACTTGATAAAAACTTCAAAAAAATAGAGACAGTAGTAACGTTTCTCAAAACCCATGGATTCAATGAAACCCAGATCTCAAGACTGGTTAGAGTACGCCCCAAGATTCTTTTTTGCAATCCCAAGAAAACCCTAATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAGAAACCGATCTGCCAAGAATTGTGTCGTCTAATCCGGTTTTGTTAGGGAGGAGTTTGGAGAATCAGTTGATTCCTTGTCATAACTTCCTCAAAAATTTACTAGTTCTTGATGAAAATGTTGTTAAGGTGTTGAAGCGGAATTCGAGGATACTTCTTTATGATTTTGAGAAGAATATTGGTCCGAATATTAGTTCGTTGAGTGGGGTTGGGGTTCCTAAATCGCTAATTTCGTTCATGTTGTTTCGGTTTCCGTCTGTTGCTCATCAAAAGCATGAGAAGTTTAAGAGGGCAGTAGAGGAAGTTATTGGAATGGGATTTAATCCATCGAGGTCCATGTTCGTTCAAGCGGTTCAAGTTGTTTGTGAAATGACTAAAATGACGTTAGATCGTAAATGGGCGGCTTATAGGAGGTGGGGTTTGTCTGATGACGAGATTCGAATGGCATTTAGATCGCATCCCTTTTGTATGAATTTATCGGAGGAGAAAATTACAAGGGGGATGGATTTTCTTGTGAACAAAATGGGTTGGGAGGCAGTGAAAGTCGCTAGGTGTCCGGCCGTACTTTTTTTTAATTTGGAAAATAGGATCATTCCGAGGTGTAGAGTGATTAAAATATTGATATTGGAGGGAATTTTGAAGAAAGATATGGGCTTGACTAACTTTTTGATGCCTTCGGAAGATCAGTTCTTGGAAAAGTACGTGAGGAACTATGAAGACAATGTTCCTGAGCTACTAAATGTTTATAGAGGGTGGCCGGTTCTTTTGAAAAAAAAGACTTAA

Network for GWHGAAZE015859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	67	217	1.00E-20
PF02536.15	mTERF	139	341	4.00E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.132
	SRR3591706	second leaf	2.172
	SRR3591707	mature leaf	2.571
	SRR3591708	Shoot apex	4.221
	SRR3591709	Stem	4.295
	SRR3591710	White floral bud	4.854
	SRR3591711	White flower	8.213
	SRR3591712	Green floral bud	7.135
	SRR3591713	Yellow flower	6.338
SRP173429	SRR8316895	Juvenile bud stage	3.235
	SRR8316896	Juvenile bud stage	3.192
	SRR8316897	Juvenile bud stage	1.508
	SRR8316894	Third green stage	1.738
	SRR8316900	Third green stage	7.062
	SRR8316901	Third green stage	4.790
	SRR8316898	Complete white stage	0.866
	SRR8316899	Complete white stage	5.417
	SRR8316903	Complete white stage	3.192
	SRR8316902	Silver flowering stage	2.944
	SRR8316904	Silver flowering stage	3.851
	SRR8316905	Silver flowering stage	1.424
	SRR8316906	Gold flowering stage	4.466
	SRR8316907	Gold flowering stage	4.561
	SRR8316908	Gold flowering stage	5.849
SRP132670	SRR6706286	Control	3.436
	SRR6706287	Light intensity 50%	2.995
	SRR6706288	Light intensity 20%	3.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.873
	CNS0095593	Slightly white alabastrum(diploid) 2	3.962
	CNS0095594	Slightly white alabastrum(diploid) 3	2.518
	CNS0095595	Whole white alabastrum(diploid) 2	3.365
	CNS0095596	Whole white alabastrum(diploid) 3	2.411
	CNS0095597	Whole white alabastrum(diploid) 4	3.673
	CNS0095598	Silvery flower (diploied) 1	6.039
	CNS0095599	Silvery flower (diploied) 2	1.448
	CNS0095600	Silvery flower (diploied) 3	4.310
	CNS0095601	Golden flower (diploid) 1	2.110
	CNS0095602	Golden flower (diploid) 2	3.250
	CNS0095603	Golden flower (diploid) 3	4.131
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.742
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.155
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.194
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.773
	CNS0095610	Silvery flower (tetraploid) 1	6.732
	CNS0095611	Silvery flower (tetraploid) 2	4.684
	CNS0095612	Silvery flower (tetraploid) 3	3.519
	CNS0095613	Golden flower (tetraploid) 1	2.406
	CNS0095614	Golden flower (tetraploid) 2	4.498
	CNS0095615	Golden flower (tetraploid) 3	3.365
CRA001975	CRR073297	Stem 1	3.171
	CRR073298	Stem 2	1.968
	CRR073299	Stem 3	1.343
	CRR073300	Leaf 1	1.972
	CRR073301	Leaf 2	2.419
	CRR073302	Leaf 3	1.549
	CRR073303	Juvenile bud 1	1.366
	CRR073304	Juvenile bud 2	1.353
	CRR073305	Juvenile bud 3	0.989
	CRR073306	Third green 1	0.270
	CRR073307	Third green 2	0.904
	CRR073308	Third green 3	0.359
	CRR073309	Second white 1	2.090
	CRR073310	Second white 2	1.187
	CRR073311	Second white 3	0.923
	CRR073312	Silver flowering 1	0.525
	CRR073313	Silver flowering 2	0.091
	CRR073314	Silver flowering 3	0.210
	CRR073315	Gold flowering 1	0.511
	CRR073316	Gold flowering 2	1.977
	CRR073317	Gold flowering 3	0.858
	CRR073318	Tawny withering 1	1.594
	CRR073319	Tawny withering 2	0.879
	CRR073320	Tawny withering 3	1.480