Gene detail

Detail information of GWHGAAZE015860

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAK09226.1	0	flavonol synthase [Gentiana triflora]
Swissprot	tr\|Q7XZQ6\|FLS_PETCR	1E-179	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|F1SZA2\|F1SZA2_GENTR	0	Flavonol synthase {ECO:0000313\|EMBL:BAK09226.1}
TAIR10	AT5G08640.2	3E-117	flavonol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60660309	60669783	-
GWHAAZE00000004	mRNA	60660309	60669783	-
GWHAAZE00000004	exon	60660309	60660593	-
GWHAAZE00000004	exon	60663574	60663901	-
GWHAAZE00000004	exon	60669362	60669783	-
GWHAAZE00000004	CDS	60669362	60669783	-
GWHAAZE00000004	CDS	60663574	60663901	-
GWHAAZE00000004	CDS	60660381	60660593	-
GWHAAZE00000004	three_prime_UTR	60660309	60660380	-

Transcript Sequence
>GWHTAAZE015876 ATGGACACAATCCCCTCCGAGTTTATTCAGTCCGAAAACGAGCAACCCGTGTTCACCACCCAGCATGGGGTGGTGTTAGAGGTTCCGGTGATCGACCTCAACCAACCGGAGCAGCAAAATCTAGTCCGGTTAGTCTCAGACGCAAGCCGAGAGTGGGGCATATTCCAAGTGGTGAACCATGGGATCCCAAATGAGGTTATAAGCAAGTTGCAAATAGTGGGTAAAGAGTTCTTTGAGCTCCCACAAGAGGAGAAAGATGCCTATTCTAAGCCACAAGGTTACCAAGGTGTTGAGGGGTATGGTACAAACCTACAAAAGGAAGTTGAGGGCAAGAGAGAGTGGGTTGATTATTTGTTTCACAAGATATGGCCACCTTCTTCTATTGACTACCACTTCTGGCCAAAAAATCCTCCGTCTTACAGAGAGGCAAATGAGGAATATGCAAATGGGTTGCAGAAGGTGGCAGACAAGTTATTTGAGTGCCTTTCATTAGGGCTTGGACTTGATGGTGTTGACATTAAAAATGCAATTGGTGGGGATGACCTAATTTACCTCATGAAAATAAATTATTACCCACCATGTCCTAGGCCTGACCTGGCACTAGGTGTGGTGGCCCACACTGACATGTCATCCATCACCATTCTCGTCCCCAATGAGGTCCAAGGCCTCCAAGTCTTCAACAATGACTATTGGTATGATGTCAAGTACATCCCTAATGCCCTTGTCATTCACATTGGTGATCAAATTGAGATACTAAGCAATGGAGAGTACAAAAGCGTGTTACACAGAACAACGGTGAACAAAGAGATGATAAGAATGTCGTGGCCAGTGTTCCTAGAGCCACCATTGGAACTTGAGACTGGCCCGATTCCGAAGCTTATAAATGAAGAGAATGCACCAAAATACAAGACCAAAAAGTACAGAGATTATGCATATTGCAAGCTCAATAAACTTCCTCAATGAAGCATACCACCATCAAATTCTACTAGTAATGACCATTTCTTTCTTCTCTTCTTTTTTTTTGGTGGGGTGGGG

Network for GWHGAAZE015860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	28	135	8.00E-25
PF03171.21	2OG-FeII_Oxy	186	281	3.80E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05278	FLS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.027
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.015
	SRR3591709	Stem	55.871
	SRR3591710	White floral bud	19.366
	SRR3591711	White flower	13.623
	SRR3591712	Green floral bud	20.020
	SRR3591713	Yellow flower	0.690
SRP173429	SRR8316895	Juvenile bud stage	1.711
	SRR8316896	Juvenile bud stage	2.949
	SRR8316897	Juvenile bud stage	1.330
	SRR8316894	Third green stage	1.742
	SRR8316900	Third green stage	4.874
	SRR8316901	Third green stage	4.274
	SRR8316898	Complete white stage	2.358
	SRR8316899	Complete white stage	15.753
	SRR8316903	Complete white stage	6.258
	SRR8316902	Silver flowering stage	0.899
	SRR8316904	Silver flowering stage	0.829
	SRR8316905	Silver flowering stage	0.006
	SRR8316906	Gold flowering stage	0.072
	SRR8316907	Gold flowering stage	0.336
	SRR8316908	Gold flowering stage	0.113
SRP132670	SRR6706286	Control	8.831
	SRR6706287	Light intensity 50%	8.421
	SRR6706288	Light intensity 20%	8.694
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.663
	CNS0095593	Slightly white alabastrum(diploid) 2	1.836
	CNS0095594	Slightly white alabastrum(diploid) 3	2.682
	CNS0095595	Whole white alabastrum(diploid) 2	1.764
	CNS0095596	Whole white alabastrum(diploid) 3	0.321
	CNS0095597	Whole white alabastrum(diploid) 4	1.521
	CNS0095598	Silvery flower (diploied) 1	2.616
	CNS0095599	Silvery flower (diploied) 2	1.975
	CNS0095600	Silvery flower (diploied) 3	1.865
	CNS0095601	Golden flower (diploid) 1	1.595
	CNS0095602	Golden flower (diploid) 2	1.395
	CNS0095603	Golden flower (diploid) 3	1.212
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.854
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.476
	CNS0095610	Silvery flower (tetraploid) 1	3.987
	CNS0095611	Silvery flower (tetraploid) 2	4.206
	CNS0095612	Silvery flower (tetraploid) 3	1.976
	CNS0095613	Golden flower (tetraploid) 1	0.047
	CNS0095614	Golden flower (tetraploid) 2	1.129
	CNS0095615	Golden flower (tetraploid) 3	0.136
CRA001975	CRR073297	Stem 1	4.431
	CRR073298	Stem 2	7.907
	CRR073299	Stem 3	1.755
	CRR073300	Leaf 1	6.161
	CRR073301	Leaf 2	8.337
	CRR073302	Leaf 3	6.532
	CRR073303	Juvenile bud 1	7.418
	CRR073304	Juvenile bud 2	1.605
	CRR073305	Juvenile bud 3	6.850
	CRR073306	Third green 1	0.105
	CRR073307	Third green 2	1.493
	CRR073308	Third green 3	0.709
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.052
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.073
	CRR073318	Tawny withering 1	1.209
	CRR073319	Tawny withering 2	1.889
	CRR073320	Tawny withering 3	1.055