Gene detail

Detail information of GWHGAAZE015863

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU23831.1	2.75148E-84	hypothetical protein MIMGU_mgv1a000481mg [Erythranthe guttata]
Swissprot	tr\|B9EXM2\|CARB_ORYSJ	4E-83	Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBL	tr\|A0A022Q783\|A0A022Q783_ERYGU	1E-84	Uncharacterized protein {ECO:0000313\|EMBL:EYU23831.1}
TAIR10	AT1G29900.1	8E-72	carbamoyl phosphate synthetase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60761942	60765737	-
GWHAAZE00000004	mRNA	60761942	60765737	-
GWHAAZE00000004	exon	60761942	60762051	-
GWHAAZE00000004	exon	60762358	60762382	-
GWHAAZE00000004	exon	60762503	60763084	-
GWHAAZE00000004	exon	60765687	60765737	-
GWHAAZE00000004	CDS	60765687	60765737	-
GWHAAZE00000004	CDS	60762503	60763084	-
GWHAAZE00000004	CDS	60762358	60762382	-
GWHAAZE00000004	CDS	60761942	60762051	-

Transcript Sequence
>GWHTAAZE015879 ATGTTGAAGACGTTCTCCGTTGAAAAAAATGATTTTGATGCCTTTTTTAGGCAATACTTAGACGAGAAAAAGGCCCAGTTTGCTAGTGGCGATTATATACGTATTTGGGGAACATCACCCGATTCCATTGATGTCGCTGAAGACAAAAAGAGGTTCAATGCAATCTTGAAGGAACTAAAGATTGAACAACCAAAAGGCGACATTGCTAAAGGTAATGCCGATGCTCTTGCTATTGAATTAAAAATTGGGTACCCGGTCGTTGTTCGGCCTTCCTATGTTTCGGGTGGAAGGGTCATGGAGATTGTTTACAATGATGACCGGCTCCTGACCTACCTGGAAACTGCCGTTAAGGTTGATCCGGACAGTCCAGTCTTGGTTGACAAATATTTAATTGACGCCAAAGAGACTGATATTGACGCACTTGCTGATTTGAATGGCGATGTAATGATTGGTGGGATAATTGAACACACTGAGCAAATGGGGGTGCACTCGGGTGACTCAGCTTGCATGATTCCTACACAAACCATTTTGGCTTCTTGTTTAGACATGATCAGAGCATTAACCAAAAAATTGGCAAAGAGGCTAAACATGTCCAAGGCGATTGGCCACCCGTTGGCTAAATACGTTTCCCTTGACCCGAATGTGTTGTACTGGCGAGGGTATCATGTTGATGAGATTAATGAGCGTAAGCTGAGGAGATTGGCTCTTGCATACAAGGTTCCTATTGTAACAACTGTTGTTAGAGCTTTGGCACTACCAAGAAGATAA

Network for GWHGAAZE015863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02786.18	CPSase_L_D2	48	200	3.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01955	carB, CPA2	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.049
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.025
	SRR8316896	Juvenile bud stage	0.014
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.014
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.025
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.024
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.051
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.028
	SRR8316907	Gold flowering stage	0.058
	SRR8316908	Gold flowering stage	0.038
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.031
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.009
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.008
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.080
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.019
	CNS0095612	Silvery flower (tetraploid) 3	0.008
	CNS0095613	Golden flower (tetraploid) 1	0.006
	CNS0095614	Golden flower (tetraploid) 2	0.014
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.116
	CRR073298	Stem 2	0.064
	CRR073299	Stem 3	0.038
	CRR073300	Leaf 1	0.063
	CRR073301	Leaf 2	0.092
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.051
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.030
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.033
	CRR073309	Second white 1	0.009
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.051
	CRR073313	Silver flowering 2	0.052
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.091
	CRR073316	Gold flowering 2	0.126
	CRR073317	Gold flowering 3	0.019
	CRR073318	Tawny withering 1	0.072
	CRR073319	Tawny withering 2	0.030
	CRR073320	Tawny withering 3	0.000