Gene detail

Detail information of GWHGAAZE015864

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP18860.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q42601\|CARB_ARATH	Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBL	tr\|A0A068VDE1\|A0A068VDE1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_297 {ECO:0000313\|EMBL:CDP18860.1}
TAIR10	AT1G29900.1	carbamoyl phosphate synthetase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60772257	60778882	+
GWHAAZE00000004	mRNA	60772257	60778882	+
GWHAAZE00000004	exon	60772257	60773633	+
GWHAAZE00000004	exon	60774006	60774698	+
GWHAAZE00000004	exon	60777326	60778882	+
GWHAAZE00000004	CDS	60772257	60773633	+
GWHAAZE00000004	CDS	60774006	60774698	+
GWHAAZE00000004	CDS	60777326	60778882	+

Transcript Sequence
>GWHTAAZE015880 ATGGATCATTGTGTGAATCATTGCGAAAATGTGTCTACCAAGCTTATTTCATCGTCATGCACTCTAACTCATTTGAGTTCCTATTTATCAAACCATAAATCTGTTCGCCTGTTTTTCTACCCAAAGCAATCAACTAGAAAGAACCGTTCTTCGTCTTTAAACCTAAAACGCCAGCCCTCTATTGTGCATTCGACTAAATTGAAAGGCGGAGTGAGCTCAATTCGAAGCGAACTTAATGTTGCAACTATTGGAGGAGTGTTTAATATGGAAGGAAAGGGTAAAAGGACTGATATAAAGAAGATTTTGATACTAGGTGCAGGCCCTATTGTTATAGGGCAAGCTTGCGAGTTTGATTACTCGGGGACTCAAGCTTGTAAGGCCCTTAAAGAAGAGGGATATGAAGTTGTTCTTATAAATTCGAATCCGGCTACTATAATGACCGACCCTGATATGGCGGATAGGACTTATATTGAGCCTTTGACACCTGAATTAGTTGAGCAAATAATCGAAAAAGAGAGGCCTGATGCTCTATTGCCCACCATGGGCGGGCAGACGGCTCTTAATCTTGCGGTTGCATTGGCTGAAAGCGGGGTGCTTAAGAAATATGGGGTTGAGTTGATTGGAGCGAAACTTGAAGCGATCCAGAAAGCGGAAGATAGGGATTTGTTTAAGCAAGCTATGAAGAATATTGGGCTAAAGACCCCTCCTTCAGGAATTGGAACTACTCTTGATGAGTGTTTCGAGATTGCGAATACGATCGGGGAGTTTCCTTTGATTATTAGGCCAGCCTTCACATTGGGTGGGACTGGAGGTGGGATTGCTTACAATAGGGAGGAATTCGAGGCCATTTGTAAATCGGGTCTTGCAGCTAGTGTGACTTCGCAGGTTTTGGTGGAAAAGTCACTGTTAGGTTGGAAAGAATATGAACTTGAGGTTATGAGGGACTTGGCAGATAATGTAGTTATTATATGTTCGATTGAGAATATTGATCCGATGGGGGTTCATACGGGGGATTCAATCACTGTTGCTCCAGCACAGACCTTGACAGATAAAGAGTACCAGCGTCTTAGGGATTACTCAATTGCTATTATAAGGGAGATTGGAGTTGAATGTGGTGGTTCAAATGTTCAATTTGCTGTCAATCCTGTAGATGGAGAGGTTATGATTATTGAGATGAATCCTAGAGTTTCGAGGTCTTCGGCTTTGGCTTCAAAAGCTACTGGTTTCCCTATAGCAAAGATGGCAGCTAAGTTATCAGTTGGGTACTCGTTGGATCAGATTCCTAATGATATCACAAAGAAAACACCAGCTAGTTTCGAACCTTCCATTGATTATGTGGTAACAAAGGTAAGCATGTATCTTTCTCATTATTTTTTAATACCCCGGTTTGCATTTGAGAAATTCCCTGGCTCCAAGGCTTTACTGACAACTCAAATGAAATCTGTTGGTGAGTCTATGGCTGTAGGCCGCACTTTCCAAGAATCCTTTCAAAAAGCTGTCCGATCACTGGAATGCGGCTACTCTGGTTGGGGTTGTGCCCCGATCAAGGAACTGAACTGGGACTGGGATCAGTTGAAATACAACCTTCGAGCTCCTAACCCAGATCGAATCTTTTCCGTATATGCTGCAATGAAGAAGGGGATGGAGGTGGATGAAATTCATGAGCTAAGTTTCATTGACAAATGGTTCCTCACTCAGCTTAAGGAGCTTGTTGACGTAGAACGGTACCTATTGGCTCAAAATTTGTCTAGTTTGAAAAAAGATGAGTTATATGAAATAAAAAAGAGAGGTTTTAGTGACAAGCAAATAGCTTTTGCAATGAAAACTACTGAAAAAGAAGTACGTTCGAAGCGTTTGTTGTTAGGTGTTAAGCCTACTTATAAACGAGTTGATACATGTGCTGCAGAATTTGAGGCTGATACTCCTTATATGTATTCTTCTTATGACTTTGAGTGTGAATCGGTTCCTAGCAAAAGGAAAAAAGTTTTGATTTTAGGGGGTGGACCAAATCGGATTGGTCAGGGAATTGAATTTGATTACTGCTGCTGCCATGCGTCCTTTGCTCTTCAGAATGCAGGCTATGAGACTATCATGATGAACTCAAATCCCGAGACAGTATCCACTGATTACGATACAAGTGATCGTCTCTACTTTGAGCCTCTAACTGTTGAAGACGTTCTCAACATAATCGACTTGGAACAACCCGATGGCATCATTGTGCAGTTTGGAGGTCAAACCCCTTTGAAATTGGCCCTTCCAATTCAGCAATACTTAGACGAGAAAAAGCCCCAGTCTGCCAGTGGCGGTCATGTACGTATTTGGGGAACATCACCTGATTCCATTGATGCCGCTGAAGACAGAGAGAGGTTCAATGCAATCTTGAAGGAACTAGAGATTGAACAACCAAAAGGCGGCATTGCTAAAAGTGAAGCCGATGCTCTTGCTATTGCCTCGGAAATTGGGTACCCAGTCGTTGTTCGGCCTTCCTATGTTTTGGGTGGAAGGGCCATGGAGATTGTTTACAATGATGACCGGCTCGTGACCTACCTCGAAACTGCCGTTAAGGTTGATCCGGACCGTCCAGTCTTGGTTGACAAATATTTAATTGACGCCATAGAGATTGATATTGACGCACTAGCTGATTTGAATGGTGATGTAGTGATTGGTGGGATAATGGAGCACATTGAACAAGCGGGGGTGCATTCGGGTGACTCAGCTTGCATGATTCCTACACAAACCATTTCGGCTTCTTGTTTAGACACAATCAGAACATGGACCAAGAAATTGGCAAAGAGGCTAAACGTGTGTGGCCTAATGAACTGTCAGTACGCTATTACGGCTTCTGGGGGAGTTTATTTGCTCGAGGCAAACCCTCGTGCATCCCGTACTGTCCCTTTTGTGTCCAAGGCGATTGGCCACCCATTGGCTAAATACGCTTCCCTTGTAATGTCGGGCAAGTCCCTTAGTGACCTAAGTTTTACTAGAGAAGTTATTCCTAAACACGTAGCCGTTAAGGAAGCCGTTCTACCATTTGAGAAATTCCAGGGCTGTGATGTGCTTTTAGGACCCGAAATGCGTAGTACTGGTGAGGTAATGGGTATTTCCTATGACTTTGCGGTAGCATTTGCCAAGGCCCAAATCGCTGCCAGCCAAAAGCTACCACTTTCAGGCATTGTTTTCCTCAGCCTAAACGACTTGACGAAACCCCAGCTTGCCAAAATTGCACTGGCCTTTTTAGGGTTAGGGTTTGGAATTGTTTCAACCTCTGGAACTGCACATGTTCTTGAGTTAGAGGGGATCCCGGTTGAACGCGTATTGAAAATGCACGAGGGAAGGCCACACGCAGGTGATATGATTGCTAACAGGCAGATTCAATTGATGGTTATAACAAGTGCAGGGGATCAGGTTGATGAGATTGATGGGCGTAAGCTGAGGAGAATGGCTCTTGCATACAAGGTTCCTATTGTAACAACTGTTGCTGGAGCTTTGGCCACTGCCAAGGCGATAAAGAGCTTGAAATCGAGCAAGATCGAGATGATTGCTCTTCAGGATTATTTTGATGTTGAGAAGGTAGATGAGAGTGCAAAAAACCTACAATCGGTTTCGTCCTCTCTTCTAATTGACTAG

Network for GWHGAAZE015864

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02786.18	CPSase_L_D2	219	426	5.30E-71
PF02787.20	CPSase_L_D3	528	604	2.40E-26
PF02786.18	CPSase_L_D2	786	989	1.70E-36
PF02142.23	MGS	1071	1157	2.00E-16

Protein Sequence

>GWHPAAZE015872
MDHCVNHCENVSTKLISSSCTLTHLSSYLSNHKSVRLFFYPKQSTRKNRSSSLNLKRQPSIVHSTKLKGGVSSIRSELNVATIGGVFNMEGKGKRTDIKKILILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPDMADRTYIEPLTPELVEQIIEKERPDALLPTMGGQTALNLAVALAESGVLKKYGVELIGAKLEAIQKAEDRDLFKQAMKNIGLKTPPSGIGTTLDECFEIANTIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASVTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITKKTPASFEPSIDYVVTKVSMYLSHYFLIPRFAFEKFPGSKALLTTQMKSVGESMAVGRTFQESFQKAVRSLECGYSGWGCAPIKELNWDWDQLKYNLRAPNPDRIFSVYAAMKKGMEVDEIHELSFIDKWFLTQLKELVDVERYLLAQNLSSLKKDELYEIKKRGFSDKQIAFAMKTTEKEVRSKRLLLGVKPTYKRVDTCAAEFEADTPYMYSSYDFECESVPSKRKKVLILGGGPNRIGQGIEFDYCCCHASFALQNAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNIIDLEQPDGIIVQFGGQTPLKLALPIQQYLDEKKPQSASGGHVRIWGTSPDSIDAAEDRERFNAILKELEIEQPKGGIAKSEADALAIASEIGYPVVVRPSYVLGGRAMEIVYNDDRLVTYLETAVKVDPDRPVLVDKYLIDAIEIDIDALADLNGDVVIGGIMEHIEQAGVHSGDSACMIPTQTISASCLDTIRTWTKKLAKRLNVCGLMNCQYAITASGGVYLLEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLSDLSFTREVIPKHVAVKEAVLPFEKFQGCDVLLGPEMRSTGEVMGISYDFAVAFAKAQIAASQKLPLSGIVFLSLNDLTKPQLAKIALAFLGLGFGIVSTSGTAHVLELEGIPVERVLKMHEGRPHAGDMIANRQIQLMVITSAGDQVDEIDGRKLRRMALAYKVPIVTTVAGALATAKAIKSLKSSKIEMIALQDYFDVEKVDESAKNLQSVSSSLLID

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01955	carB, CPA2	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.483
	SRR3591706	second leaf	21.302
	SRR3591707	mature leaf	11.689
	SRR3591708	Shoot apex	36.944
	SRR3591709	Stem	21.964
	SRR3591710	White floral bud	19.072
	SRR3591711	White flower	26.915
	SRR3591712	Green floral bud	39.016
	SRR3591713	Yellow flower	15.937
SRP173429	SRR8316895	Juvenile bud stage	28.831
	SRR8316896	Juvenile bud stage	38.222
	SRR8316897	Juvenile bud stage	22.636
	SRR8316894	Third green stage	17.340
	SRR8316900	Third green stage	50.732
	SRR8316901	Third green stage	44.360
	SRR8316898	Complete white stage	5.372
	SRR8316899	Complete white stage	39.788
	SRR8316903	Complete white stage	15.183
	SRR8316902	Silver flowering stage	11.034
	SRR8316904	Silver flowering stage	16.451
	SRR8316905	Silver flowering stage	6.540
	SRR8316906	Gold flowering stage	19.732
	SRR8316907	Gold flowering stage	19.701
	SRR8316908	Gold flowering stage	28.893
SRP132670	SRR6706286	Control	37.224
	SRR6706287	Light intensity 50%	39.975
	SRR6706288	Light intensity 20%	46.078
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.830
	CNS0095593	Slightly white alabastrum(diploid) 2	26.914
	CNS0095594	Slightly white alabastrum(diploid) 3	22.369
	CNS0095595	Whole white alabastrum(diploid) 2	21.731
	CNS0095596	Whole white alabastrum(diploid) 3	20.742
	CNS0095597	Whole white alabastrum(diploid) 4	17.985
	CNS0095598	Silvery flower (diploied) 1	26.231
	CNS0095599	Silvery flower (diploied) 2	20.506
	CNS0095600	Silvery flower (diploied) 3	33.939
	CNS0095601	Golden flower (diploid) 1	18.703
	CNS0095602	Golden flower (diploid) 2	28.061
	CNS0095603	Golden flower (diploid) 3	27.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.070
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.394
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.979
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.534
	CNS0095610	Silvery flower (tetraploid) 1	37.503
	CNS0095611	Silvery flower (tetraploid) 2	33.858
	CNS0095612	Silvery flower (tetraploid) 3	18.910
	CNS0095613	Golden flower (tetraploid) 1	10.209
	CNS0095614	Golden flower (tetraploid) 2	25.610
	CNS0095615	Golden flower (tetraploid) 3	19.649
CRA001975	CRR073297	Stem 1	47.061
	CRR073298	Stem 2	43.188
	CRR073299	Stem 3	32.891
	CRR073300	Leaf 1	49.771
	CRR073301	Leaf 2	43.379
	CRR073302	Leaf 3	32.099
	CRR073303	Juvenile bud 1	38.371
	CRR073304	Juvenile bud 2	23.347
	CRR073305	Juvenile bud 3	52.498
	CRR073306	Third green 1	2.972
	CRR073307	Third green 2	3.422
	CRR073308	Third green 3	4.678
	CRR073309	Second white 1	4.917
	CRR073310	Second white 2	4.706
	CRR073311	Second white 3	5.695
	CRR073312	Silver flowering 1	4.931
	CRR073313	Silver flowering 2	5.728
	CRR073314	Silver flowering 3	5.855
	CRR073315	Gold flowering 1	13.125
	CRR073316	Gold flowering 2	24.402
	CRR073317	Gold flowering 3	13.733
	CRR073318	Tawny withering 1	23.370
	CRR073319	Tawny withering 2	17.943
	CRR073320	Tawny withering 3	25.889