Gene detail

Detail information of GWHGAAZE015866

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074771.1	0	PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q42601\|CARB_ARATH	2E-176	Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBL	tr\|A0A068VDE1\|A0A068VDE1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_297 {ECO:0000313\|EMBL:CDP18860.1}
TAIR10	AT1G29900.1	4E-129	carbamoyl phosphate synthetase B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60784631	60786163	+
GWHAAZE00000004	mRNA	60784631	60786163	+
GWHAAZE00000004	exon	60784631	60784711	+
GWHAAZE00000004	exon	60784802	60785243	+
GWHAAZE00000004	exon	60785380	60785496	+
GWHAAZE00000004	exon	60785601	60786163	+
GWHAAZE00000004	CDS	60784631	60784711	+
GWHAAZE00000004	CDS	60784802	60785243	+
GWHAAZE00000004	CDS	60785380	60785496	+
GWHAAZE00000004	CDS	60785601	60786163	+

Transcript Sequence
>GWHTAAZE015882 ATGAACTCAAATCCTAAGATAGTATCCACTGATTATGATACAAGTGATCGTCCCTACTTTGAGCCTCTAAATGTTGAAGACCAATACTTAGACGAGAAAAAGCCCCAGTCTGCCAGTGGTGGTTATATACGTATTTGGGGAACATCACCCGATTCCATTGATGTCGCTGAAGACAGAGAGAGGTTCAATGCAATCTTGAAAGAACTAGAAATTGAACAACCAAAAGGCGGCATTGCTAAAAGTGAAGCCGATGCTCTTGCTATTGCCTCGGAAATTGGGTACCCAGTCGTTGTTCGGCCATCCTATGTTTTGGGTGGAAGGGCCATGGAGATTGTTTACAATGATGACCGGCTCGTGACCTACCTCGAAACTGCCGTTAAGGTTGATCCGGACCGTCCAGTCTTGGTTGACAAATATTTAATTGACGCCATAGAGATTGATATTGACGCACTAGCTGATTTGAATGGTGATGTAGTGATTGGTGGGATAATTGAATACATTGAGCAAGCGGGGGTGCACTCGGTTTCTAGGGATGTTTATTTGCTCGAGGCAAACCCTCCTGCATCAACTATTGTCCCGTTTGTGTCCAAGGCGATTGGCCAACCCTTGGCTAAATATGCTTCCCTTGTAATGTTGGCAAGACCCGAAATGCGTAGTACTGGCGAGGTAATGGGTATTTCCTACGACTTTGCGGTAGCATTTGCCAAGGCCCAAATAGCTGCCAGCCAAAAGCTACCACTTTCGGGCACTGTTTTCCTCAGCCCAAACAACTTGACGAAAACCCAGCTAGCCAAAATTGCACAGGCCTTTGTAGCGTTAGGAATTAGAATTGTTTCAACCTCGGGGACTGCATATGTTCTTGAGTTAGAAGGGATCCTGATTGAACGCGTGTTGAAAATGCACGAGGGAAGGCCACACGCGGGTGATATGATTGCTAACACGCAGATTCAATTGATGGTTATCACAAGTGCAGAGGATCAGGTTAATGAGATTGATGGGCGTAAGCTGAGGAGAATTGCTCTTGCAGACAAGGTTCCAATTCTAACAACTGTTGCGGGAGCTTTGGCCACTGCCAAGGCGATAAAGAGCTTGAAATCAAGCAAGATCGAGATGATTGCTCTTCAGGATTATTTTGATGTTGAGAAGGTAAATGACAGTGCAAAAAACTTGCAATCGGTTTCTTCTTCTCTTCTTATTGACTAG

Network for GWHGAAZE015866

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02786.18	CPSase_L_D2	58	169	1.70E-19
PF02142.23	MGS	263	349	2.40E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01955	carB, CPA2	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.920
	SRR3591706	second leaf	1.503
	SRR3591707	mature leaf	1.039
	SRR3591708	Shoot apex	3.458
	SRR3591709	Stem	1.692
	SRR3591710	White floral bud	1.871
	SRR3591711	White flower	3.039
	SRR3591712	Green floral bud	4.653
	SRR3591713	Yellow flower	1.416
SRP173429	SRR8316895	Juvenile bud stage	0.701
	SRR8316896	Juvenile bud stage	1.004
	SRR8316897	Juvenile bud stage	0.574
	SRR8316894	Third green stage	0.619
	SRR8316900	Third green stage	1.462
	SRR8316901	Third green stage	1.047
	SRR8316898	Complete white stage	0.075
	SRR8316899	Complete white stage	0.984
	SRR8316903	Complete white stage	0.343
	SRR8316902	Silver flowering stage	0.239
	SRR8316904	Silver flowering stage	0.352
	SRR8316905	Silver flowering stage	0.106
	SRR8316906	Gold flowering stage	0.205
	SRR8316907	Gold flowering stage	0.248
	SRR8316908	Gold flowering stage	0.404
SRP132670	SRR6706286	Control	0.916
	SRR6706287	Light intensity 50%	0.899
	SRR6706288	Light intensity 20%	0.987
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.208
	CNS0095593	Slightly white alabastrum(diploid) 2	0.534
	CNS0095594	Slightly white alabastrum(diploid) 3	0.181
	CNS0095595	Whole white alabastrum(diploid) 2	0.683
	CNS0095596	Whole white alabastrum(diploid) 3	1.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.316
	CNS0095598	Silvery flower (diploied) 1	0.610
	CNS0095599	Silvery flower (diploied) 2	0.152
	CNS0095600	Silvery flower (diploied) 3	0.623
	CNS0095601	Golden flower (diploid) 1	0.500
	CNS0095602	Golden flower (diploid) 2	0.504
	CNS0095603	Golden flower (diploid) 3	0.547
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.419
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.379
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.119
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.451
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.243
	CNS0095610	Silvery flower (tetraploid) 1	0.634
	CNS0095611	Silvery flower (tetraploid) 2	0.745
	CNS0095612	Silvery flower (tetraploid) 3	0.263
	CNS0095613	Golden flower (tetraploid) 1	0.147
	CNS0095614	Golden flower (tetraploid) 2	0.351
	CNS0095615	Golden flower (tetraploid) 3	0.322
CRA001975	CRR073297	Stem 1	1.045
	CRR073298	Stem 2	1.150
	CRR073299	Stem 3	0.923
	CRR073300	Leaf 1	1.384
	CRR073301	Leaf 2	1.294
	CRR073302	Leaf 3	1.015
	CRR073303	Juvenile bud 1	0.857
	CRR073304	Juvenile bud 2	0.799
	CRR073305	Juvenile bud 3	1.211
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.065
	CRR073308	Third green 3	0.259
	CRR073309	Second white 1	0.170
	CRR073310	Second white 2	0.189
	CRR073311	Second white 3	0.216
	CRR073312	Silver flowering 1	0.448
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.312
	CRR073315	Gold flowering 1	0.551
	CRR073316	Gold flowering 2	0.914
	CRR073317	Gold flowering 3	0.495
	CRR073318	Tawny withering 1	0.761
	CRR073319	Tawny withering 2	0.787
	CRR073320	Tawny withering 3	0.565