Detail information of GWHGAAZE015890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010675078.13.15027E-57PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Beta vulgaris subsp. vulgaris]
trEMBLtr|M1CKG2|M1CKG2_SOLTU1E-57Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400069446}
TAIR10AT1G18340.13E-42basal transcription factor complex subunit-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6221621062225824-
GWHAAZE00000004mRNA6221621062225824-
GWHAAZE00000004exon6222577062225824-
GWHAAZE00000004exon6222538762225487-
GWHAAZE00000004exon6222488062224917-
GWHAAZE00000004exon6222475762224802-
GWHAAZE00000004exon6222275462222807-
GWHAAZE00000004exon6222157062221638-
GWHAAZE00000004exon6221930562219381-
GWHAAZE00000004exon6221686262216946-
GWHAAZE00000004exon6221621062216275-
GWHAAZE00000004CDS6222577062225824-
GWHAAZE00000004CDS6222538762225487-
GWHAAZE00000004CDS6222488062224917-
GWHAAZE00000004CDS6222475762224802-
GWHAAZE00000004CDS6222275462222807-
GWHAAZE00000004CDS6222157062221638-
GWHAAZE00000004CDS6221930562219381-
GWHAAZE00000004CDS6221686262216946-
GWHAAZE00000004CDS6221621062216275-
Transcript Sequence

Network for GWHGAAZE015890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03850.15Tfb4491472.20E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03143TFIIH3, GTF2H3, TFB4 Basal transcription factors map03022
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006289biological_processnucleotide-excision repair
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0000439cellular_componenttranscription factor TFIIH core complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.592
SRR3591706second leaf6.463
SRR3591707mature leaf4.446
SRR3591708Shoot apex11.283
SRR3591709Stem10.219
SRR3591710White floral bud11.372
SRR3591711White flower7.460
SRR3591712Green floral bud15.360
SRR3591713Yellow flower4.903
SRP173429 SRR8316895Juvenile bud stage 8.131
SRR8316896Juvenile bud stage 15.135
SRR8316897Juvenile bud stage 6.680
SRR8316894Third green stage 4.483
SRR8316900Third green stage 18.127
SRR8316901Third green stage 17.234
SRR8316898Complete white stage 4.326
SRR8316899Complete white stage 11.422
SRR8316903Complete white stage 5.759
SRR8316902Silver flowering stage4.158
SRR8316904Silver flowering stage5.953
SRR8316905Silver flowering stage2.129
SRR8316906Gold flowering stage 6.216
SRR8316907Gold flowering stage 8.509
SRR8316908Gold flowering stage 4.523
SRP132670SRR6706286Control9.522
SRR6706287Light intensity 50%10.095
SRR6706288Light intensity 20%12.170
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.392
CNS0095593Slightly white alabastrum(diploid) 221.929
CNS0095594Slightly white alabastrum(diploid) 321.658
CNS0095595Whole white alabastrum(diploid) 222.130
CNS0095596Whole white alabastrum(diploid) 328.752
CNS0095597Whole white alabastrum(diploid) 426.309
CNS0095598Silvery flower (diploied) 110.472
CNS0095599Silvery flower (diploied) 29.873
CNS0095600Silvery flower (diploied) 37.558
CNS0095601Golden flower (diploid) 15.493
CNS0095602Golden flower (diploid) 29.846
CNS0095603Golden flower (diploid) 37.253
CNS0095604Slightly white alabastrum(tetraploid) 123.520
CNS0095605Slightly white alabastrum(tetraploid) 225.694
CNS0095606Slightly white alabastrum(tetraploid) 311.841
CNS0095607Whole white alabastrum(tetraploid) 131.119
CNS0095608Whole white alabastrum(tetraploid) 223.605
CNS0095609Whole white alabastrum(tetraploid) 315.957
CNS0095610Silvery flower (tetraploid) 14.606
CNS0095611Silvery flower (tetraploid) 27.148
CNS0095612Silvery flower (tetraploid) 35.538
CNS0095613Golden flower (tetraploid) 13.150
CNS0095614Golden flower (tetraploid) 25.451
CNS0095615Golden flower (tetraploid) 34.056
CRA001975CRR073297Stem 110.865
CRR073298Stem 211.841
CRR073299Stem 37.156
CRR073300Leaf 114.108
CRR073301Leaf 212.319
CRR073302Leaf 310.614
CRR073303Juvenile bud 19.718
CRR073304Juvenile bud 25.788
CRR073305Juvenile bud 33.441
CRR073306Third green 12.171
CRR073307Third green 22.445
CRR073308Third green 33.923
CRR073309Second white 11.857
CRR073310Second white 21.415
CRR073311Second white 31.651
CRR073312Silver flowering 12.342
CRR073313Silver flowering 21.914
CRR073314Silver flowering 31.549
CRR073315Gold flowering 12.442
CRR073316Gold flowering 22.439
CRR073317Gold flowering 31.275
CRR073318Tawny withering 19.552
CRR073319Tawny withering 28.442
CRR073320Tawny withering 312.058