Gene detail

Detail information of GWHGAAZE015893

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009360773.1	2.81248E-19	PREDICTED: uncharacterized protein LOC103951189 [Pyrus x bretschneideri]
trEMBL	tr\|M5VIE3\|M5VIE3_PRUPE	1E-19	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00516.1}
TAIR10	AT2G04865.1	1E-13	Aminotransferase-like, plant mobile domain family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	62294342	62303163	+
GWHAAZE00000004	mRNA	62294342	62303163	+
GWHAAZE00000004	exon	62294342	62294350	+
GWHAAZE00000004	exon	62294434	62294515	+
GWHAAZE00000004	exon	62294658	62295074	+
GWHAAZE00000004	exon	62295266	62295363	+
GWHAAZE00000004	exon	62295878	62295945	+
GWHAAZE00000004	exon	62296023	62296207	+
GWHAAZE00000004	exon	62302701	62302803	+
GWHAAZE00000004	exon	62303089	62303163	+
GWHAAZE00000004	CDS	62294342	62294350	+
GWHAAZE00000004	CDS	62294434	62294515	+
GWHAAZE00000004	CDS	62294658	62295074	+
GWHAAZE00000004	CDS	62295266	62295363	+
GWHAAZE00000004	CDS	62295878	62295945	+
GWHAAZE00000004	CDS	62296023	62296083	+
GWHAAZE00000004	three_prime_UTR	62296084	62296207	+
GWHAAZE00000004	three_prime_UTR	62302701	62302803	+
GWHAAZE00000004	three_prime_UTR	62303089	62303163	+

Transcript Sequence
>GWHTAAZE015909 ATGAAGACTGTAGCATCAGTGAAAGACCACACACAAAACCCTATATTGTGGAAACCGGATGACAGGGTTCTAGCTATGTTAGAAGGAACCTGTTTGCCAGTAGATGGTAAGGATGTCACTGGTTTTGAAGGCGATCATACGACTATAAGTGAAAAATTGCTAGGTAAAAATGGTAGAATTAAAGAAAAATCTAAAGGAAAGTTAAAAGAAAGAGGCGCTGTAAAGCTTACATGGCTTAGGGAAAACTTCACTGCGGTCCTTAAAAACATAGATGAGGAGAAATTGATGTATTATGTCAGAGCATACGTGCTCTACATCATCGGGTCAGTTGTTTGTCCCAACAAATCTACAACTGTTCCTTTGATGTTTCTTCATTTGTTGAGGAAGAAGGAGGAGTTCAATAGGTACTCGTGGGGGGCTGCCATGTTGGCACACCTCCATACTGCGTTTAAAGGAGTGGTACAAATGGGGTACTACATGTCTTGCAGGGCATACATTATCCTTGATGGTTGGGCTACAAAGCTTCATATTGACTCCAATAATAATCATAGTGGGAGAGACTCGAAGGATATTTATGGCATCTTGAAGAGGCTCCAGCCTGATGACCTAGGAAAAGAAAGGTCTGTGAGGATAAGCAGGGGAAAAGAAAGGTTAAGGGCAAGTGGAAAAGAAAGGAAAGTGAGTTCCGCACGAAGGGAACTGAGAACTCTGAGTTCGTGGATAAGACTTCAGTGACACAGGCTGTTGACGCGAGCAATAGCGGCCAAAAAGAAGATTCTTTTAACACAACAAAACTAGTGGATGAGGAGGGACCTGAGCTTATAGAGACAACAAAACTAGCTGAAAAAGCAGATGACAGATATCTGCAACAGCCAACGTCTCCTAGGGGAAGGCCAAGCTGTGATTATCATTTTTTCAGTACATACTTCTATCCGAAGCTGAAAGAGGCTGTACTTAACAAGTGGGGTGACAAAGAAAATTCATTTGTGAAGATTAGAGGGTGGTGGAAAGGTGTCAACATATTTGAGAAACCATAT

Network for GWHGAAZE015893

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10536.10	PMD	31	151	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.542
	SRR3591706	second leaf	0.201
	SRR3591707	mature leaf	0.559
	SRR3591708	Shoot apex	0.100
	SRR3591709	Stem	0.606
	SRR3591710	White floral bud	0.111
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.259
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.784
	SRR8316896	Juvenile bud stage	3.351
	SRR8316897	Juvenile bud stage	0.135
	SRR8316894	Third green stage	1.646
	SRR8316900	Third green stage	2.263
	SRR8316901	Third green stage	3.003
	SRR8316898	Complete white stage	0.340
	SRR8316899	Complete white stage	3.635
	SRR8316903	Complete white stage	1.968
	SRR8316902	Silver flowering stage	0.622
	SRR8316904	Silver flowering stage	0.612
	SRR8316905	Silver flowering stage	0.169
	SRR8316906	Gold flowering stage	0.924
	SRR8316907	Gold flowering stage	0.407
	SRR8316908	Gold flowering stage	0.464
SRP132670	SRR6706286	Control	3.343
	SRR6706287	Light intensity 50%	4.313
	SRR6706288	Light intensity 20%	3.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.464
	CNS0095593	Slightly white alabastrum(diploid) 2	0.895
	CNS0095594	Slightly white alabastrum(diploid) 3	0.566
	CNS0095595	Whole white alabastrum(diploid) 2	1.168
	CNS0095596	Whole white alabastrum(diploid) 3	0.481
	CNS0095597	Whole white alabastrum(diploid) 4	1.110
	CNS0095598	Silvery flower (diploied) 1	0.981
	CNS0095599	Silvery flower (diploied) 2	1.855
	CNS0095600	Silvery flower (diploied) 3	0.658
	CNS0095601	Golden flower (diploid) 1	0.682
	CNS0095602	Golden flower (diploid) 2	0.526
	CNS0095603	Golden flower (diploid) 3	0.775
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.018
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.094
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.057
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.219
	CNS0095611	Silvery flower (tetraploid) 2	0.017
	CNS0095612	Silvery flower (tetraploid) 3	0.244
	CNS0095613	Golden flower (tetraploid) 1	0.297
	CNS0095614	Golden flower (tetraploid) 2	0.362
	CNS0095615	Golden flower (tetraploid) 3	0.150
CRA001975	CRR073297	Stem 1	3.212
	CRR073298	Stem 2	3.087
	CRR073299	Stem 3	0.410
	CRR073300	Leaf 1	3.089
	CRR073301	Leaf 2	3.296
	CRR073302	Leaf 3	0.333
	CRR073303	Juvenile bud 1	0.133
	CRR073304	Juvenile bud 2	0.173
	CRR073305	Juvenile bud 3	0.317
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.250
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.033
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.473
	CRR073316	Gold flowering 2	0.271
	CRR073317	Gold flowering 3	0.166
	CRR073318	Tawny withering 1	0.593
	CRR073319	Tawny withering 2	0.546
	CRR073320	Tawny withering 3	0.458