Gene detail

Detail information of GWHGAAZE015907

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP10919.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9MBA1\|CAO_ARATH	Chlorophyllide a oxygenase, chloroplastic (Precursor)
trEMBL	tr\|A0A068URM6\|A0A068URM6_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_49 {ECO:0000313\|EMBL:CDP10919.1}
TAIR10	AT1G44446.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	62795674	62803156	+
GWHAAZE00000004	mRNA	62795674	62803156	+
GWHAAZE00000004	exon	62795674	62795751	+
GWHAAZE00000004	exon	62796972	62797205	+
GWHAAZE00000004	exon	62798077	62798181	+
GWHAAZE00000004	exon	62798926	62799201	+
GWHAAZE00000004	exon	62799861	62800008	+
GWHAAZE00000004	exon	62800545	62800729	+
GWHAAZE00000004	exon	62801078	62801190	+
GWHAAZE00000004	exon	62802042	62802336	+
GWHAAZE00000004	exon	62802986	62803156	+
GWHAAZE00000004	CDS	62795674	62795751	+
GWHAAZE00000004	CDS	62796972	62797205	+
GWHAAZE00000004	CDS	62798077	62798181	+
GWHAAZE00000004	CDS	62798926	62799201	+
GWHAAZE00000004	CDS	62799861	62800008	+
GWHAAZE00000004	CDS	62800545	62800729	+
GWHAAZE00000004	CDS	62801078	62801190	+
GWHAAZE00000004	CDS	62802042	62802336	+
GWHAAZE00000004	CDS	62802986	62803156	+

Transcript Sequence
>GWHTAAZE015923 ATGTCAGCCATTGCTACAGCTGCAGCTCTGTCTCTGCCAATCTCAATCTATAGATCATCGAAGTTAAACACCAAAAGGGGAATTAGAGGATTTCGCGTGTTTGCTATATATGGGGAGGAAAGTGGATTAGTAAACAAGAAAAACCAATGGAGTGCCATATTCGATGTGGAAGATCCAAGGTCTAAAGTCCCACAAGTTAAAGGAAAATTCTTGGATGTAAATCAAGCTCTAGAACTTGCAAGATTCGATATTCAATATTGTGATTGGCGGGCTCGTCAAGATCTTCTTACAATCATGCTCCTTCACGAAAAGGTTGTGGATGTTTTAAACCCTCTAGCTCGAGATTACAAATCCATCGGTACCATAAAGAACGAGCTTGCCGAGTTGCAAGAAGAGCTTTCAAAAGCCCATAAACAGGTACATATATCTGAAGCAAGAGTTTCTGCAGCCGTAGATAAGATAACTTACATGGAGGAATTGGTTCATGATAGGCTCTTGCAGGATAGAAACACGAAAGAGTTAGACACATCCCTTTCTCCTAGTACGTCCACCGAATCTTTAGATACCTTAAAACGGAAAAAGATTCCTCGGAAAATCCTGAACGTGTCTGGTCCGGTCCAACCTTACCATCCCAATTTGAAGAACTTTTGGTACCCTGTTGCTTTCTCCAATGACCTCAAGGACGATACTATGATCCCAATGGATTGCTTTGAAGAACCTTGGGTGATGTTTCGCGGAGAAGATGGAAAACCAGGATGTGTACAAAACACTTGTGCTCACAGAGCATGCCCTCTTGATTTAGGTTCAGTGTGCGAAGGACGCATTAAATGTCCTTACCATGGTTGGGAATACTCGACGGAAGGAAAATGCGAGAAAATGCCTTCAACAAAATTTGTTAATGTTAAGATAAAAGCATTGCCGTGCTTTGAGCAAGAAGGGATGATATGGATTTGGCCTGGCAATGACCCTCCAGCAGAAGCCATACCTTCTTTACAACCTCCTTCGGGATTTAAAATACATGCTGAGCTTGTGATGGATCTTCCAGTGGAACATGGGCTACTTCTTGACAACCTTTTGGATCTTGCACATGCCCCTTTCACTCACACTTCCACCTTTGCCAAGGGATGGAGTGTTCCAAGCTTGGTCAAATTCTTGACACCCTCGTCTGGGCTCCAAGGATATTGGGACCCGTATCCGATAGATATGGAATTCCGACCACCTTGTATGGTGCTATCAACCATTGGAATTTCAAAGCCCGGGAAATTGGAAGGAAAAAGCACCGCCCAATGCTCCACGCACCTTCACCAACTCCACGTCTGCTTACCATCATCACGAGGGAAGACGAGGCTATTATACAGAATGTCACTTGACTTCGCTCCCGTGCTACAACACATCCCTTTCATGAATTACCTTTGGAGGCATTTTGCAGAAAAGGTCTTGAACGAGGATTTACGGCTTGTACTTGGCCAACAGGACCGTATGATCAACGGGGCAAACGTGTGGAATTGCCCTGTATCATATGATAAGCTAGGAATAAGATACAGGCTATGGAGAGATGCGGTTGAACGAGGAGTTGAGCAATTACCCTTCAGCAACTCAAAATAG

Network for GWHGAAZE015907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00355.27	Rieske	217	297	7.40E-21
PF19112.1	VanA_C	350	374	4.40E-05
PF08417.13	PaO	404	498	3.10E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13600	CAO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding
GO:0010277	molecular_function	chlorophyllide a oxygenase [overall] activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.536
	SRR3591706	second leaf	121.715
	SRR3591707	mature leaf	113.397
	SRR3591708	Shoot apex	51.376
	SRR3591709	Stem	40.818
	SRR3591710	White floral bud	13.613
	SRR3591711	White flower	19.524
	SRR3591712	Green floral bud	9.242
	SRR3591713	Yellow flower	10.080
SRP173429	SRR8316895	Juvenile bud stage	9.410
	SRR8316896	Juvenile bud stage	10.904
	SRR8316897	Juvenile bud stage	4.455
	SRR8316894	Third green stage	6.004
	SRR8316900	Third green stage	12.461
	SRR8316901	Third green stage	10.359
	SRR8316898	Complete white stage	6.269
	SRR8316899	Complete white stage	12.073
	SRR8316903	Complete white stage	12.132
	SRR8316902	Silver flowering stage	9.005
	SRR8316904	Silver flowering stage	11.739
	SRR8316905	Silver flowering stage	5.532
	SRR8316906	Gold flowering stage	21.308
	SRR8316907	Gold flowering stage	13.778
	SRR8316908	Gold flowering stage	15.402
SRP132670	SRR6706286	Control	15.098
	SRR6706287	Light intensity 50%	14.034
	SRR6706288	Light intensity 20%	14.666
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.899
	CNS0095593	Slightly white alabastrum(diploid) 2	7.719
	CNS0095594	Slightly white alabastrum(diploid) 3	8.239
	CNS0095595	Whole white alabastrum(diploid) 2	8.336
	CNS0095596	Whole white alabastrum(diploid) 3	8.871
	CNS0095597	Whole white alabastrum(diploid) 4	7.568
	CNS0095598	Silvery flower (diploied) 1	16.599
	CNS0095599	Silvery flower (diploied) 2	11.899
	CNS0095600	Silvery flower (diploied) 3	18.307
	CNS0095601	Golden flower (diploid) 1	13.002
	CNS0095602	Golden flower (diploid) 2	19.593
	CNS0095603	Golden flower (diploid) 3	18.337
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.887
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.680
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.504
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.050
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.805
	CNS0095610	Silvery flower (tetraploid) 1	19.778
	CNS0095611	Silvery flower (tetraploid) 2	23.216
	CNS0095612	Silvery flower (tetraploid) 3	3.819
	CNS0095613	Golden flower (tetraploid) 1	5.806
	CNS0095614	Golden flower (tetraploid) 2	15.350
	CNS0095615	Golden flower (tetraploid) 3	16.004
CRA001975	CRR073297	Stem 1	9.806
	CRR073298	Stem 2	8.661
	CRR073299	Stem 3	9.284
	CRR073300	Leaf 1	6.258
	CRR073301	Leaf 2	8.264
	CRR073302	Leaf 3	7.050
	CRR073303	Juvenile bud 1	10.139
	CRR073304	Juvenile bud 2	7.485
	CRR073305	Juvenile bud 3	10.781
	CRR073306	Third green 1	45.598
	CRR073307	Third green 2	27.390
	CRR073308	Third green 3	37.362
	CRR073309	Second white 1	24.673
	CRR073310	Second white 2	27.121
	CRR073311	Second white 3	39.020
	CRR073312	Silver flowering 1	23.465
	CRR073313	Silver flowering 2	15.891
	CRR073314	Silver flowering 3	12.851
	CRR073315	Gold flowering 1	3.797
	CRR073316	Gold flowering 2	8.179
	CRR073317	Gold flowering 3	3.968
	CRR073318	Tawny withering 1	5.658
	CRR073319	Tawny withering 2	4.928
	CRR073320	Tawny withering 3	4.822