Detail information of GWHGAAZE015911


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006434208.10hypothetical protein CICLE_v10001823mg [Citrus clementina]
Swissprottr|Q9XI00|SKI32_ARATH0F-box protein 7
trEMBLtr|V4SIA6|V4SIA6_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR47448.1}
TAIR10AT1G21760.14E-155F-box protein 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6283803162849100-
GWHAAZE00000004mRNA6283803162849100-
GWHAAZE00000004exon6284909162849100-
GWHAAZE00000004exon6284770962847795-
GWHAAZE00000004exon6284687562846987-
GWHAAZE00000004exon6284553362845649-
GWHAAZE00000004exon6284534462845440-
GWHAAZE00000004exon6284442962844502-
GWHAAZE00000004exon6284377962843832-
GWHAAZE00000004exon6284356862843669-
GWHAAZE00000004exon6284329562843353-
GWHAAZE00000004exon6283924762839460-
GWHAAZE00000004exon6283803162838090-
GWHAAZE00000004CDS6284909162849100-
GWHAAZE00000004CDS6284770962847795-
GWHAAZE00000004CDS6284687562846987-
GWHAAZE00000004CDS6284553362845649-
GWHAAZE00000004CDS6284534462845440-
GWHAAZE00000004CDS6284442962844502-
GWHAAZE00000004CDS6284377962843832-
GWHAAZE00000004CDS6284356862843669-
GWHAAZE00000004CDS6284329562843353-
GWHAAZE00000004CDS6283924762839460-
GWHAAZE00000004CDS6283803162838090-
Transcript Sequence

Network for GWHGAAZE015911

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like611062.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf42.543
SRR3591706second leaf36.861
SRR3591707mature leaf59.297
SRR3591708Shoot apex44.274
SRR3591709Stem83.307
SRR3591710White floral bud63.628
SRR3591711White flower58.030
SRR3591712Green floral bud57.269
SRR3591713Yellow flower77.685
SRP173429 SRR8316895Juvenile bud stage 31.452
SRR8316896Juvenile bud stage 56.357
SRR8316897Juvenile bud stage 30.235
SRR8316894Third green stage 20.315
SRR8316900Third green stage 52.315
SRR8316901Third green stage 57.263
SRR8316898Complete white stage 24.113
SRR8316899Complete white stage 94.989
SRR8316903Complete white stage 35.859
SRR8316902Silver flowering stage34.417
SRR8316904Silver flowering stage39.231
SRR8316905Silver flowering stage19.335
SRR8316906Gold flowering stage 85.927
SRR8316907Gold flowering stage 72.495
SRR8316908Gold flowering stage 77.419
SRP132670SRR6706286Control72.097
SRR6706287Light intensity 50%70.303
SRR6706288Light intensity 20%76.646
CNP0000432CNS0095592Slightly white alabastrum(diploid) 168.771
CNS0095593Slightly white alabastrum(diploid) 259.191
CNS0095594Slightly white alabastrum(diploid) 364.267
CNS0095595Whole white alabastrum(diploid) 262.181
CNS0095596Whole white alabastrum(diploid) 362.152
CNS0095597Whole white alabastrum(diploid) 458.522
CNS0095598Silvery flower (diploied) 161.316
CNS0095599Silvery flower (diploied) 244.983
CNS0095600Silvery flower (diploied) 355.476
CNS0095601Golden flower (diploid) 160.260
CNS0095602Golden flower (diploid) 269.547
CNS0095603Golden flower (diploid) 363.353
CNS0095604Slightly white alabastrum(tetraploid) 163.205
CNS0095605Slightly white alabastrum(tetraploid) 257.791
CNS0095606Slightly white alabastrum(tetraploid) 374.649
CNS0095607Whole white alabastrum(tetraploid) 158.944
CNS0095608Whole white alabastrum(tetraploid) 256.431
CNS0095609Whole white alabastrum(tetraploid) 357.581
CNS0095610Silvery flower (tetraploid) 175.608
CNS0095611Silvery flower (tetraploid) 287.140
CNS0095612Silvery flower (tetraploid) 365.032
CNS0095613Golden flower (tetraploid) 183.947
CNS0095614Golden flower (tetraploid) 278.521
CNS0095615Golden flower (tetraploid) 3105.868
CRA001975CRR073297Stem 141.259
CRR073298Stem 236.114
CRR073299Stem 338.840
CRR073300Leaf 144.058
CRR073301Leaf 246.991
CRR073302Leaf 333.533
CRR073303Juvenile bud 135.680
CRR073304Juvenile bud 226.458
CRR073305Juvenile bud 329.765
CRR073306Third green 112.747
CRR073307Third green 218.150
CRR073308Third green 315.813
CRR073309Second white 124.961
CRR073310Second white 232.377
CRR073311Second white 329.629
CRR073312Silver flowering 130.696
CRR073313Silver flowering 229.848
CRR073314Silver flowering 320.873
CRR073315Gold flowering 128.426
CRR073316Gold flowering 240.966
CRR073317Gold flowering 331.043
CRR073318Tawny withering 138.574
CRR073319Tawny withering 238.175
CRR073320Tawny withering 343.695