Gene detail

Detail information of GWHGAAZE015920

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG30796.1	Aldehyde dehydrogenase family 3 member H1 [Gossypium arboreum]
Swissprot	tr\|Q70DU8\|AL3H1_ARATH	Aldehyde dehydrogenase family 3 member H1
trEMBL	tr\|A0A059BXC2\|A0A059BXC2_EUCGR	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}
TAIR10	AT1G44170.2	aldehyde dehydrogenase 3H1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63207971	63218309	+
GWHAAZE00000004	mRNA	63207971	63218309	+
GWHAAZE00000004	exon	63207971	63208186	+
GWHAAZE00000004	exon	63210630	63210698	+
GWHAAZE00000004	exon	63210785	63210881	+
GWHAAZE00000004	exon	63213967	63214203	+
GWHAAZE00000004	exon	63214801	63214916	+
GWHAAZE00000004	exon	63215050	63215154	+
GWHAAZE00000004	exon	63215231	63215403	+
GWHAAZE00000004	exon	63215500	63215590	+
GWHAAZE00000004	exon	63216451	63216600	+
GWHAAZE00000004	exon	63218043	63218309	+
GWHAAZE00000004	CDS	63207971	63208186	+
GWHAAZE00000004	CDS	63210630	63210698	+
GWHAAZE00000004	CDS	63210785	63210881	+
GWHAAZE00000004	CDS	63213967	63214203	+
GWHAAZE00000004	CDS	63214801	63214916	+
GWHAAZE00000004	CDS	63215050	63215154	+
GWHAAZE00000004	CDS	63215231	63215403	+
GWHAAZE00000004	CDS	63215500	63215590	+
GWHAAZE00000004	CDS	63216451	63216600	+
GWHAAZE00000004	CDS	63218043	63218309	+

Transcript Sequence
>GWHTAAZE015936 ATGGCGTCGGAGGATGAGACTGCGGTGGCGTTCGGTGCGGAAGCTGCGAAATCGACGGTGATGGAGCTGAGAAGTACGTTCAGGAGTGGTAAGACTAAGAGCTACGATTGGAGAGTTTCTCAGCTGAAGAATATCTTGAAATTAACCGATGATCACGAGAAGGATATCATCGATGCTCTTCGCTCCGACCTCGCTAAACCTGAACTCGAATCCTTCATTGCTCTGATCAAGTCCTCTTGTAACTTCGCACTGAAAGAACTACACCGTTGGATGATGCCAGAGAAAGCCAAAACTTCATTAACCACCTTTCCTTCATCAGCAGAAATAGTTTCAGAACCATTGGGTGTCATATTGGTCATATCAGCATGGAACTATCCTTTCTTAATTTATTTCCGTTGTGATATTATTCCAGTGTTATCTCTTGATCCGGTTATTGGAGCTATTGCCGCCGGCAACGCAGTGGTTTTGAAACCATCAGAAGTTGCTCCAAGCTCATCGTCATTATTGGCAAAATATTTAGGAGAGTATATGGACTGCTCAGCGGTAAAAGTTGTCGAGGGTTCTGTTCCTGAAACATCTGCGCTACTGGAGCAAAAGTGGGATAAGATATTTTATACAGGAAATGGAAAAGTGGGTTGCATCGTGTTGGCTGCTGCCGCAAAGCACCTTACACCGGTAGCTTTGGAGCTTGGAGGAAAGTCCCCTGTTGTTGTGGATTCAAATATCAACTTGAAAGTTGCAACAAGGCGCATAATTTCAGGAAAGTGGGGTTGCAACAATGGACAAGCATGTATCTCTCCTGATTACATTATAACAACAAAAGATTATGCTCCAACACTGGTTGATTCTTTGAAACTTGAGTTGAAGAAATTCTATGGGGAGGATCCGTTGAAATCAGAAGACTTGTCTCGCATTGTAAATTTAGGCCACTTTGGTCGCTTAACAAATCTGTTAAGTGATAGTAAGGTTTCCGATAAAATAGTTTATGGAGGCCAAAAGGACAAACCCAACCTAAAGATTGCTCCAACAATTTTGCTGGATGTCCCAGAAGATTCTCTGATCATGAATGAGGAGATATTTGGTCCTTTGCTTCCAATTATCACGGTTGACAAATTGGAGGATAGTTTTGATATAATCAACTCGAGATCAAAGCCACTTGCAGCATACTTATTTACTAACAATAAGAAGCTCAAGCAGGAGTTTGTGAGCAGGATCTCTGCTGGAGGTGTGGTCACTAATGATACTACTCTACATGACCTAATCGCTTCAATGAACTTAATGGTGCAGCTTACTCTTCAAAGCTTACCATTTGGCGGAGTAGGTGAAAGCGGAATGGGAGCATACCACGGCAAATTTTCATTCGACGCATTTAGTCACAAGAAGGCAGTTCTGCACAGAAGTTTCGCAGGTGATGCACCAGCCAGGTACCCCCCATACACTCATGGAAAGCTAAGACTTCTCAAGGCCCTTTTAAATGGAAGTATATTTGGCATTATTCGTGCTTTATTCGGGTGGTCTTAG

Network for GWHGAAZE015920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	13	463	3.20E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0006081	biological_process	cellular aldehyde metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.660
	SRR3591706	second leaf	26.725
	SRR3591707	mature leaf	23.134
	SRR3591708	Shoot apex	31.018
	SRR3591709	Stem	56.009
	SRR3591710	White floral bud	16.740
	SRR3591711	White flower	21.708
	SRR3591712	Green floral bud	20.395
	SRR3591713	Yellow flower	31.723
SRP173429	SRR8316895	Juvenile bud stage	19.126
	SRR8316896	Juvenile bud stage	27.618
	SRR8316897	Juvenile bud stage	13.314
	SRR8316894	Third green stage	11.970
	SRR8316900	Third green stage	30.661
	SRR8316901	Third green stage	26.227
	SRR8316898	Complete white stage	14.077
	SRR8316899	Complete white stage	50.238
	SRR8316903	Complete white stage	17.049
	SRR8316902	Silver flowering stage	8.850
	SRR8316904	Silver flowering stage	12.940
	SRR8316905	Silver flowering stage	6.859
	SRR8316906	Gold flowering stage	27.505
	SRR8316907	Gold flowering stage	24.001
	SRR8316908	Gold flowering stage	28.707
SRP132670	SRR6706286	Control	34.469
	SRR6706287	Light intensity 50%	32.191
	SRR6706288	Light intensity 20%	35.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.521
	CNS0095593	Slightly white alabastrum(diploid) 2	21.479
	CNS0095594	Slightly white alabastrum(diploid) 3	19.736
	CNS0095595	Whole white alabastrum(diploid) 2	18.169
	CNS0095596	Whole white alabastrum(diploid) 3	20.561
	CNS0095597	Whole white alabastrum(diploid) 4	18.610
	CNS0095598	Silvery flower (diploied) 1	25.737
	CNS0095599	Silvery flower (diploied) 2	27.240
	CNS0095600	Silvery flower (diploied) 3	34.286
	CNS0095601	Golden flower (diploid) 1	26.848
	CNS0095602	Golden flower (diploid) 2	40.851
	CNS0095603	Golden flower (diploid) 3	38.571
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.852
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.495
	CNS0095610	Silvery flower (tetraploid) 1	24.982
	CNS0095611	Silvery flower (tetraploid) 2	27.311
	CNS0095612	Silvery flower (tetraploid) 3	18.244
	CNS0095613	Golden flower (tetraploid) 1	13.102
	CNS0095614	Golden flower (tetraploid) 2	24.696
	CNS0095615	Golden flower (tetraploid) 3	20.847
CRA001975	CRR073297	Stem 1	26.540
	CRR073298	Stem 2	27.049
	CRR073299	Stem 3	26.524
	CRR073300	Leaf 1	30.986
	CRR073301	Leaf 2	31.288
	CRR073302	Leaf 3	27.366
	CRR073303	Juvenile bud 1	29.983
	CRR073304	Juvenile bud 2	22.940
	CRR073305	Juvenile bud 3	34.124
	CRR073306	Third green 1	7.022
	CRR073307	Third green 2	10.609
	CRR073308	Third green 3	8.166
	CRR073309	Second white 1	14.078
	CRR073310	Second white 2	9.879
	CRR073311	Second white 3	6.276
	CRR073312	Silver flowering 1	10.171
	CRR073313	Silver flowering 2	12.781
	CRR073314	Silver flowering 3	14.751
	CRR073315	Gold flowering 1	39.080
	CRR073316	Gold flowering 2	68.638
	CRR073317	Gold flowering 3	45.885
	CRR073318	Tawny withering 1	44.732
	CRR073319	Tawny withering 2	33.660
	CRR073320	Tawny withering 3	35.794