Gene detail

Detail information of GWHGAAZE015932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664183.1	0	PREDICTED: SWI/SNF complex subunit SWI3C isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9XI07\|SWI3C_ARATH	2E-157	SWI/SNF complex subunit SWI3C
trEMBL	tr\|A0A061FH16\|A0A061FH16_THECC	1E-179	SWITCH/sucrose nonfermenting 3C {ECO:0000313\|EMBL:EOY16366.1}
TAIR10	AT1G21700.1	5E-131	SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63590223	63597940	+
GWHAAZE00000004	mRNA	63590223	63597940	+
GWHAAZE00000004	exon	63590223	63590241	+
GWHAAZE00000004	exon	63590360	63590821	+
GWHAAZE00000004	exon	63591944	63592458	+
GWHAAZE00000004	exon	63597530	63597940	+
GWHAAZE00000004	CDS	63590223	63590241	+
GWHAAZE00000004	CDS	63590360	63590821	+
GWHAAZE00000004	CDS	63591944	63592458	+
GWHAAZE00000004	CDS	63597530	63597940	+

Transcript Sequence
>GWHTAAZE015948 ATGCCAGCTTCTTCCGCAGAGGCACGCAACAGGTGGAGGAAGCGGAAGAGAGGTAGAAAACCTAAACTCCAATCACAAGACGATGAAGATCTCGAGGACGACGAAGAAGAACAAGATGATGAATCAGACGAACAACAACAACAACATCATCAAAACCCTAACCCTAACTGCTCCAACAATCCAACGGAAGTATTGTCAGATGTGGTTCGAATCTCCGACTTTCCTGCGGTGGTCAGGCACATGGTGAATCGGCCACACTCGTTGGTTATGGGGATTTTGGATGCGGAGAGGGCGAGTCAATGCGGGGAGAGTAGGGGGAATGGGGTTGTTTTGGAGAATATATCGTATGGGCAGGTCCGGGCTTTGTCTGTGGATGGGTGTTCTGAGAGGTTTGTGATTACACCGCCGGATATTGTGGAGGGAAGGGGTGTGGTGAAGAGGTTTGGGAGTGACCGGGTTCTTGTTGTGCCGATGCACTCAGAGTGGTTTTCACCTAACTCGGTGCATAGATTGGAGAGACAAGTAGTGCCGCATTTTTTCTCTGGGAAGACAAACCAAACACCGGAAAAATACATGGAGTGTCGGAATTGGATTGTTGCCAAGTCCATGGAGAATCCAGAGAAGAGGCTGTCACTTACCGATTGCCATGTTCTGGTATCTGGTATCAGTATAGATGATATGAGTAGAATTTTTCGGTTTCTTGATCACTGGGGGATCATTAATTACTGTGCTACTGTTCCGCATAATGTGACCCAAAATGATGGGCCGTGTTTGAATGAGGATTCAAATGGGGAACTTAGTCTTTCAGTGGCTGCTTTCAAATCAATTGATAGTTTGATCCAATTTGATAAGCCTAAATGTAGGCTTAAACCAGCAGATGTTCATGGTGAAGAGGCCTCTGATTTGGACATTGAAATCCGTGAACGATTAACGGAAAACCAGTGCATCTATTGTTCTCGGCCTCTGCCTATTCTTTACTACCAGTCACAGAAAGAGGTTGATGTACTATTGTGCTCGGATTGTTTCACTGATGGGAGATATGTAACTGGTCATTCAAGCCTAGATTTTGTAAGGATTGACCCCGCTAAAGATTATGGAGATCAGGACGGAGAAAGTTGGACCGATCAAGAAACGCTTATGCTCCTTGAGGCAATGGAACTCTACAATGAGAACTGGAATGACATTGCAGAGCATGTTGGCACCAGGACAAAAGCACAATGCATACTTCATTTTATCCGTTGGACAGTCGATGATGGTCTGCTGGATAACATTGATGTAATTAATACTTCTGCCTCAACAATTTTGTCGAACAACGATTGTGGAAGATCTCATTCAAATGCAAATGGGAATTCTGCAGGTGTTATTATGCAGTTCTCATTTTCTTCCCCTCATGTGTGGACTTACTAG

Network for GWHGAAZE015932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0221

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	157	242	1.20E-24
PF00249.32	Myb_DNA-binding	372	414	5.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.925
	SRR3591706	second leaf	10.047
	SRR3591707	mature leaf	14.799
	SRR3591708	Shoot apex	8.433
	SRR3591709	Stem	13.313
	SRR3591710	White floral bud	8.308
	SRR3591711	White flower	9.943
	SRR3591712	Green floral bud	8.581
	SRR3591713	Yellow flower	6.268
SRP173429	SRR8316895	Juvenile bud stage	5.472
	SRR8316896	Juvenile bud stage	6.249
	SRR8316897	Juvenile bud stage	3.031
	SRR8316894	Third green stage	3.602
	SRR8316900	Third green stage	8.233
	SRR8316901	Third green stage	6.940
	SRR8316898	Complete white stage	3.056
	SRR8316899	Complete white stage	10.724
	SRR8316903	Complete white stage	5.978
	SRR8316902	Silver flowering stage	2.442
	SRR8316904	Silver flowering stage	4.543
	SRR8316905	Silver flowering stage	2.094
	SRR8316906	Gold flowering stage	5.564
	SRR8316907	Gold flowering stage	5.355
	SRR8316908	Gold flowering stage	5.186
SRP132670	SRR6706286	Control	10.102
	SRR6706287	Light intensity 50%	10.608
	SRR6706288	Light intensity 20%	10.180
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.014
	CNS0095593	Slightly white alabastrum(diploid) 2	2.263
	CNS0095594	Slightly white alabastrum(diploid) 3	2.342
	CNS0095595	Whole white alabastrum(diploid) 2	2.760
	CNS0095596	Whole white alabastrum(diploid) 3	2.277
	CNS0095597	Whole white alabastrum(diploid) 4	2.437
	CNS0095598	Silvery flower (diploied) 1	6.317
	CNS0095599	Silvery flower (diploied) 2	3.491
	CNS0095600	Silvery flower (diploied) 3	6.011
	CNS0095601	Golden flower (diploid) 1	2.289
	CNS0095602	Golden flower (diploid) 2	6.755
	CNS0095603	Golden flower (diploid) 3	5.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.303
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.319
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.659
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.283
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.654
	CNS0095610	Silvery flower (tetraploid) 1	5.265
	CNS0095611	Silvery flower (tetraploid) 2	4.845
	CNS0095612	Silvery flower (tetraploid) 3	4.495
	CNS0095613	Golden flower (tetraploid) 1	2.649
	CNS0095614	Golden flower (tetraploid) 2	3.567
	CNS0095615	Golden flower (tetraploid) 3	4.135
CRA001975	CRR073297	Stem 1	6.670
	CRR073298	Stem 2	4.419
	CRR073299	Stem 3	4.814
	CRR073300	Leaf 1	6.630
	CRR073301	Leaf 2	5.946
	CRR073302	Leaf 3	3.989
	CRR073303	Juvenile bud 1	4.126
	CRR073304	Juvenile bud 2	3.644
	CRR073305	Juvenile bud 3	4.906
	CRR073306	Third green 1	1.178
	CRR073307	Third green 2	1.173
	CRR073308	Third green 3	2.571
	CRR073309	Second white 1	0.968
	CRR073310	Second white 2	1.534
	CRR073311	Second white 3	0.812
	CRR073312	Silver flowering 1	1.269
	CRR073313	Silver flowering 2	0.864
	CRR073314	Silver flowering 3	1.437
	CRR073315	Gold flowering 1	2.217
	CRR073316	Gold flowering 2	4.922
	CRR073317	Gold flowering 3	3.293
	CRR073318	Tawny withering 1	6.323
	CRR073319	Tawny withering 2	5.107
	CRR073320	Tawny withering 3	3.588